; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016730 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016730
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationscaffold563:472253..472402
RNA-Seq ExpressionMS016730
SyntenyMS016730
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009536 - plastid (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFU96531.1 Ycf3, partial [Hypericum kalmianum]1.2e-0452Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYFQ+L+R+ FLPQ  NNI +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
GAV83948.1 TPR_11 domain-containing protein, partial [Cephalotus follicularis]1.2e-0452Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYF+ LKR+ FLPQ  NN+V+IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
KAE8694331.1 Photosystem I assembly protein Ycf3 [Hibiscus syriacus]1.2e-0452Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K LKYYF+ L+R+ FLPQ  NN+V+IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
QHV40806.1 photosystem I assembly protein Ycf3 [Paris dunniana]1.2e-0452Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K LKYYFQ L+R+ FLPQ  NN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
YP_009679604.1 Ycf3 [Trichopus zeylanicus subsp. travancoricus]7.1e-0552Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EHMK L+YYFQ L+R+ FLPQ  NN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
TrEMBL top hitse value%identityAlignment
A0A1Q3CV61 TPR_11 domain-containing protein (Fragment)5.8e-0552Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYF+ LKR+ FLPQ  NN+V+IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
A0A516MUM5 Photosystem I assembly protein Ycf33.4e-0552Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EHMK L+YYFQ L+R+ FLPQ  NN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
A0A6A2ZQM7 Photosystem I assembly protein Ycf35.8e-0552Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K LKYYF+ L+R+ FLPQ  NN+V+IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
A0A6C0MV82 Photosystem I assembly protein Ycf35.8e-0552Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K LKYYFQ L+R+ FLPQ  NN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
K4KCA5 Ycf3 (Fragment)5.8e-0552Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYFQ+L+R+ FLPQ  NNI +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
SwissProt top hitse value%identityAlignment
A1XFV6 Photosystem I assembly protein Ycf32.7e-0750Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYF+ L+R+ FLPQ SNN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
A6MMK8 Photosystem I assembly protein Ycf37.8e-0748Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYFQ ++R+ FLPQ  NN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
Q4VZH4 Photosystem I assembly protein Ycf37.8e-0748Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH +N EH K L+YYF+ L+R+ FLPQ  NN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
Q6EW47 Photosystem I assembly protein Ycf32.7e-0750Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYF+ L+R+ FLPQ SNN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
Q70Y02 Photosystem I assembly protein Ycf32.7e-0750Show/hide
Query:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
        +P  +S I   + LIH  N EH K L+YYF+ L+R+ FLPQ SNN+ +IC
Subjt:  NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACCCGATCTTTCAATCAATGATATATCTATATGTCAATCTTATCCATATAAAAAACAACGAACATATGAAAGTTTTAAAATATTATTTTCAGACACTAAAGCGAAGCTC
GTTCTTACCACAAACTTCTAATAATATAGTTATGATATGT
mRNA sequenceShow/hide mRNA sequence
AACCCGATCTTTCAATCAATGATATATCTATATGTCAATCTTATCCATATAAAAAACAACGAACATATGAAAGTTTTAAAATATTATTTTCAGACACTAAAGCGAAGCTC
GTTCTTACCACAAACTTCTAATAATATAGTTATGATATGT
Protein sequenceShow/hide protein sequence
NPIFQSMIYLYVNLIHIKNNEHMKVLKYYFQTLKRSSFLPQTSNNIVMIC