CuGenDBv2

Gene ID	MS016778
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	scaffold563:825073..830041
RNA-Seq Expression	MS016778
Synteny	MS016778
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

3.0e-109

81.56

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        M +P ILSLL+ LL L+P+ +AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+ VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILS+YILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

XP_008442332.1 PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo]

3.0e-109

81.97

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        M  P ILSLL+ LL L+P+S+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIY DTHPHI+KQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILSIYILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

XP_022157271.1 uncharacterized protein LOC111024020 isoform X1 [Momordica charantia]

2.3e-117

88.93

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        MGEPSILSLLVLLLFLIP+SMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
        TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVETSIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

XP_023541018.1 uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo]

3.7e-107

80.74

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        MGEP  L LLV L  LIP  +AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         +VPMIDVHLRYSGSDLHGVTAKV DMPHIY+D+HPHIS+QFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGL LTFILSIYILQSSK+KLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

XP_038903796.1 uncharacterized protein LOC120090293 isoform X1 [Benincasa hispida]

6.7e-109

81.56

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        MGEP ILSLLV LL L+P+S+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINR+S
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIY DTHPHISK+FWDQQHWPKH+LVRYTWEEQSEIDV SGLYVLFGSGLTL+FILSI+ILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIP VGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

1.5e-109

81.56

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        M +P ILSLL+ LL L+P+ +AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+ VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIYIDTHPHISKQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILS+YILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

1.5e-109

81.97

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        M  P ILSLL+ LL L+P+S+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIY DTHPHI+KQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILSIYILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

1.5e-109

81.97

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        M  P ILSLL+ LL L+P+S+AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         EVPMIDVHLRYSGSDLHGVTAKV DMPHIY DTHPHI+KQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTL+FILSIYILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

A0A6J1DXJ6 uncharacterized protein LOC111024020 isoform X1

1.1e-117

88.93

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        MGEPSILSLLVLLLFLIP+SMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
        TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVETSIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

A0A6J1I3H9 uncharacterized protein LOC111470204

1.8e-107

80.74

Show/hide

Query:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS
        MGEP  L LLV L  LIP  +AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKS
Subjt:  MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS

Query:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI
         +VPMIDVHLRYSGSDLHGVTAKV DMPHIY+D+HPHIS+QFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGL LTFILSIYILQSSK+KLA   
Subjt:  TEVPMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYI

Query:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE
                               RFVRETVVE+SIPGVGVAKVE
Subjt:  RERLLVVGCFPKTTKFCFYCIVFRFVRETVVETSIPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

1.1e-88

74.75

Show/hide

Query:  SILSLLVLLLFLIP-VSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSTEV
        + +  LVL+    P +S AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIFAVNREVL+PI KP+GYTG DPYKI FQVG EKFLI WLLVINRKS+EV
Subjt:  SILSLLVLLLFLIP-VSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSTEV

Query:  PMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYIRER
        PMIDV+LRYSG DL GVTA+V DMPH Y++THP I KQFWD QHWPKHVLVRYTW+EQSEIDV+SG YVLFGS LT +F+LSIY+LQSS++KLAR++RE 
Subjt:  PMIDVHLRYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYIRER

Query:  LL
        ++
Subjt:  LL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAGAACCGTCGATTTTATCGCTCCTGGTTCTGTTATTGTTTCTGATCCCGGTTTCGATGGCTTACAGGCCAGGAGATATCGTTCCGATGAGCAAGATGGGACAGTA
TCACTCGTCGAGAACAGTTTGGCATGATATGATTGGTCGACATTGTCCAATCTTTGCCGTCAATCGTGAGGTTTTGGTTCCTATACCAAAGCCGGTCGGCTACACGGGAG
CTGATCCTTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTATCCCATGGCTTCTTGTGATAAATCGCAAAAGTACAGAAGTCCCAATGATTGATGTCCACTTG
AGATACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAGCGGACATGCCTCATATCTATATTGATACTCATCCACATATTAGTAAACAATTCTGGGACCAACAACA
TTGGCCAAAGCATGTGCTGGTCCGTTATACGTGGGAGGAGCAATCAGAGATCGATGTGACATCTGGATTATATGTTTTGTTTGGATCAGGTCTGACGCTAACTTTTATTT
TGTCAATTTACATCTTGCAATCATCAAAGGACAAGTTAGCAAGGTACATACGAGAGAGGTTGTTGGTTGTTGGTTGTTTTCCTAAAACTACCAAGTTTTGTTTTTATTGT
ATTGTTTTCAGGTTTGTAAGAGAAACAGTAGTCGAAACCAGCATTCCTGGCGTTGGAGTGGCAAAAGTTGAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGEPSILSLLVLLLFLIPVSMAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFAVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSTEVPMIDVHL
RYSGSDLHGVTAKVADMPHIYIDTHPHISKQFWDQQHWPKHVLVRYTWEEQSEIDVTSGLYVLFGSGLTLTFILSIYILQSSKDKLARYIRERLLVVGCFPKTTKFCFYC
IVFRFVRETVVETSIPGVGVAKVE

MS016778 (gene) of Bitter gourd (TR) v1 genome