; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016823 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016823
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein At2g31420-like
Genome locationscaffold9_1:262587..263018
RNA-Seq ExpressionMS016823
SyntenyMS016823
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598443.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4259.86Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV
        MPA LR+RI  +GG D+Q+V QK+LQ++D N+NHGRL IP KKL+NDFATEEE +++ Q++  ++ + G+   I+D  LRESVI +K WKIGS   YCL 
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV

Query:  SQWNALAQQNSLESGDYIQLWSFRKNNG---TSPPQLCFALVKLDIS
        S+WN+ A+QNSLESGDYIQLWSFR NN     +   LCFALVKLDIS
Subjt:  SQWNALAQQNSLESGDYIQLWSFRKNNG---TSPPQLCFALVKLDIS

XP_004152777.2 putative B3 domain-containing protein At2g27410 [Cucumis sativus]5.0e-4359.74Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL
        MP  LRDRI ELGG++IQ   QKRLQDTD+N+NHGRL IP KKL+NDFA+EEEK++L Q D E  KNK+G++ LI+DP LR   I +K WK+G  E YCL
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL

Query:  VSQWNALAQQNSLESGDYIQLWSFRKNNG---------TSPPQLCFALVKLDIS
        +S+WN   ++NSLESGDYIQLWSFR +N               LCFA VKLDIS
Subjt:  VSQWNALAQQNSLESGDYIQLWSFRKNNG---------TSPPQLCFALVKLDIS

XP_008445565.1 PREDICTED: B3 domain-containing protein At3g25182-like [Cucumis melo]1.3e-4362.34Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL
        M A LRDRI EL G+DIQ V QKRLQDTD+N+NHGRL IP KKL NDFA+EEEK++L Q D E  KNK+G++ LI+DP LR   I +K WK+G  + YCL
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL

Query:  VSQWNALAQQNSLESGDYIQLWSFRKNN------GTSPP---QLCFALVKLDIS
        +S+WN+  Q+NSLESGDYIQLWSFR NN       +  P    LCFALVKLDIS
Subjt:  VSQWNALAQQNSLESGDYIQLWSFRKNN------GTSPP---QLCFALVKLDIS

XP_022144152.1 B3 domain-containing protein At2g31420-like [Momordica charantia]5.8e-6888.89Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV
        MPA LRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDF TEEEK++LDQQDEHQ NK+GV ALILDPCLRES IH+KKWKIGSREIYCLV
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV

Query:  SQWNALAQQNSLESGDYIQLWSFRKNNGTSPPQLCFALVKLDIS
        SQWN+LAQ+NSLESGD+IQLWSFRKN+GT  P LCFALVKLDIS
Subjt:  SQWNALAQQNSLESGDYIQLWSFRKNNGTSPPQLCFALVKLDIS

XP_022144153.1 uncharacterized protein LOC111013910 [Momordica charantia]2.1e-5497.35Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV
        MPA LRDRIAELGGYDIQ VIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRES IHVKKWKIGSREIYCLV
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV

Query:  SQWNALAQQNSLE
        SQWNALAQQNSLE
Subjt:  SQWNALAQQNSLE

TrEMBL top hitse value%identityAlignment
A0A1S3BCJ5 B3 domain-containing protein At3g25182-like6.3e-4462.34Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL
        M A LRDRI EL G+DIQ V QKRLQDTD+N+NHGRL IP KKL NDFA+EEEK++L Q D E  KNK+G++ LI+DP LR   I +K WK+G  + YCL
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL

Query:  VSQWNALAQQNSLESGDYIQLWSFRKNN------GTSPP---QLCFALVKLDIS
        +S+WN+  Q+NSLESGDYIQLWSFR NN       +  P    LCFALVKLDIS
Subjt:  VSQWNALAQQNSLESGDYIQLWSFRKNN------GTSPP---QLCFALVKLDIS

A0A5A7VHB3 B3 domain-containing protein6.3e-4462.34Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL
        M A LRDRI EL G+DIQ V QKRLQDTD+N+NHGRL IP KKL NDFA+EEEK++L Q D E  KNK+G++ LI+DP LR   I +K WK+G  + YCL
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQD-EHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCL

Query:  VSQWNALAQQNSLESGDYIQLWSFRKNN------GTSPP---QLCFALVKLDIS
        +S+WN+  Q+NSLESGDYIQLWSFR NN       +  P    LCFALVKLDIS
Subjt:  VSQWNALAQQNSLESGDYIQLWSFRKNN------GTSPP---QLCFALVKLDIS

A0A6J1CSJ5 uncharacterized protein LOC1110139101.0e-5497.35Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV
        MPA LRDRIAELGGYDIQ VIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRES IHVKKWKIGSREIYCLV
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV

Query:  SQWNALAQQNSLE
        SQWNALAQQNSLE
Subjt:  SQWNALAQQNSLE

A0A6J1CSV9 B3 domain-containing protein At2g31420-like2.8e-6888.89Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV
        MPA LRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDF TEEEK++LDQQDEHQ NK+GV ALILDPCLRES IH+KKWKIGSREIYCLV
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV

Query:  SQWNALAQQNSLESGDYIQLWSFRKNNGTSPPQLCFALVKLDIS
        SQWN+LAQ+NSLESGD+IQLWSFRKN+GT  P LCFALVKLDIS
Subjt:  SQWNALAQQNSLESGDYIQLWSFRKNNGTSPPQLCFALVKLDIS

A0A6J1H5Z0 putative B3 domain-containing protein At3g248502.7e-4259.18Show/hide
Query:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV
        MPA +RDRI E+G Y IQ+ IQK+LQDTD+N+NHGRLS P KKL  DFATEEE++VL QQ+   K K G++ +I+DP LRES I +K WKIGS + YCL+
Subjt:  MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLV

Query:  SQWNALAQQNSLESGDYIQLWSFRKN-----NGTSPPQLCFALVKLD
        +QWN+L +QN  +SGD++QLWSFRK+       T   +LCFA+VKLD
Subjt:  SQWNALAQQNSLESGDYIQLWSFRKN-----NGTSPPQLCFALVKLD

SwissProt top hitse value%identityAlignment
Q5RM09 B3 domain-containing protein At1g059208.6e-1433.08Show/hide
Query:  GGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKI-----GSREIYCLVSQWNAL
        G  D +++I+K L   D++    RLSIPI  ++ NDF T +E +++D+ +   +   GV+A ++D   ++  +  K+W +      S   + L  +W+ +
Subjt:  GGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKI-----GSREIYCLVSQWNAL

Query:  AQQNSLESGDYIQLWSFRKNNGTSPPQLCFALV
         + N L+ GD I LWSFR N+      LCFALV
Subjt:  AQQNSLESGDYIQLWSFRKNNGTSPPQLCFALV

Q9FLV7 B3 domain-containing protein At5g240504.7e-1234.78Show/hide
Query:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ
        D +++ +K L  TD+N    RLS+P   LL NDF T  E  +++ +D +  NK GV A+++D   ++  + +K+W++          Y L+  WN + + 
Subjt:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ

Query:  NSLESGDYIQLWSFR
        N L+ GD I LWSFR
Subjt:  NSLESGDYIQLWSFR

Q9LRX6 Putative B3 domain-containing protein At3g248508.0e-1232.56Show/hide
Query:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ
        D +++ +K L  TD+N    RLS+P   LL NDF T  E +++ ++D +   K GV A+++D    +  + +K+W++          Y L+  WN + + 
Subjt:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ

Query:  NSLESGDYIQLWSFRKNNGTSPPQLCFAL
        N L+ GD I +WSFR         LCFA+
Subjt:  NSLESGDYIQLWSFRKNNGTSPPQLCFAL

Q9LSF7 B3 domain-containing protein At3g251821.9e-1334.88Show/hide
Query:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ
        D +++ +K L  TD+N    RLS+P   LL NDF T  E +++D+  ++ K K GV A+++D   ++  + +K+W++          Y L+  WN + + 
Subjt:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ

Query:  NSLESGDYIQLWSFRKNNGTSPPQLCFAL
        N L+ GD I LWSFR     S   LCFA+
Subjt:  NSLESGDYIQLWSFRKNNGTSPPQLCFAL

Q9XIP5 Putative B3 domain-containing protein At2g274105.6e-1334.35Show/hide
Query:  ELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLN-DFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQW-NAL-A
        E  GY+ +++  ++L  TDL +   RLS+P K++   DF TE+E +++  ++  +   +GV    +DP L + V+ ++KWK+    IY  V  W N L A
Subjt:  ELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLN-DFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQW-NAL-A

Query:  QQNSLESGDYIQLWSFRKNNGTSPPQLCFAL
         +   +  D   LWSFR   G    +LCFAL
Subjt:  QQNSLESGDYIQLWSFRKNNGTSPPQLCFAL

Arabidopsis top hitse value%identityAlignment
AT1G05920.1 Domain of unknown function (DUF313)6.1e-1533.08Show/hide
Query:  GGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKI-----GSREIYCLVSQWNAL
        G  D +++I+K L   D++    RLSIPI  ++ NDF T +E +++D+ +   +   GV+A ++D   ++  +  K+W +      S   + L  +W+ +
Subjt:  GGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKI-----GSREIYCLVSQWNAL

Query:  AQQNSLESGDYIQLWSFRKNNGTSPPQLCFALV
         + N L+ GD I LWSFR N+      LCFALV
Subjt:  AQQNSLESGDYIQLWSFRKNNGTSPPQLCFALV

AT2G24670.1 Domain of unknown function (DUF313)4.8e-1233.33Show/hide
Query:  VIQKRLQDTDLNRNHGRLSIPIKKLLN-DFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQWNALAQQNSLESGDYI
        +I K L  TD++ +  RLSIP+ +++  +F   EEK+ + ++D ++  K GV A+++D  LRE  ++++   +    +Y LV+ WN +     LE    I
Subjt:  VIQKRLQDTDLNRNHGRLSIPIKKLLN-DFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQWNALAQQNSLESGDYI

Query:  QLWSFRKNNGTSPPQLCFALVKL
        +LWSF  ++      L FALV L
Subjt:  QLWSFRKNNGTSPPQLCFALVKL

AT2G27410.1 Domain of unknown function (DUF313)3.9e-1434.35Show/hide
Query:  ELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLN-DFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQW-NAL-A
        E  GY+ +++  ++L  TDL +   RLS+P K++   DF TE+E +++  ++  +   +GV    +DP L + V+ ++KWK+    IY  V  W N L A
Subjt:  ELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLN-DFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQW-NAL-A

Query:  QQNSLESGDYIQLWSFRKNNGTSPPQLCFAL
         +   +  D   LWSFR   G    +LCFAL
Subjt:  QQNSLESGDYIQLWSFRKNNGTSPPQLCFAL

AT3G24850.1 Domain of unknown function (DUF313)5.7e-1332.56Show/hide
Query:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ
        D +++ +K L  TD+N    RLS+P   LL NDF T  E +++ ++D +   K GV A+++D    +  + +K+W++          Y L+  WN + + 
Subjt:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ

Query:  NSLESGDYIQLWSFRKNNGTSPPQLCFAL
        N L+ GD I +WSFR         LCFA+
Subjt:  NSLESGDYIQLWSFRKNNGTSPPQLCFAL

AT5G24050.1 Domain of unknown function (DUF313)3.3e-1334.78Show/hide
Query:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ
        D +++ +K L  TD+N    RLS+P   LL NDF T  E  +++ +D +  NK GV A+++D   ++  + +K+W++          Y L+  WN + + 
Subjt:  DIQIVIQKRLQDTDLNRNHGRLSIPIKKLL-NDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSRE-----IYCLVSQWNALAQQ

Query:  NSLESGDYIQLWSFR
        N L+ GD I LWSFR
Subjt:  NSLESGDYIQLWSFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGCACCGCTAAGGGATCGCATCGCTGAACTTGGCGGCTACGACATCCAAATAGTGATCCAAAAGCGATTGCAGGACACTGACCTTAATCGGAACCATGGTCGATT
GTCAATTCCGATTAAGAAGCTCCTTAATGATTTCGCTACAGAGGAGGAGAAGAAGGTGTTGGACCAACAAGACGAACATCAAAAGAACAAAAGTGGAGTGAGCGCGCTGA
TTCTTGATCCTTGTTTGCGAGAGAGCGTCATTCATGTGAAGAAGTGGAAGATCGGAAGCCGCGAAATCTACTGCTTGGTGTCTCAGTGGAACGCTTTGGCGCAACAAAAT
TCCTTGGAAAGTGGAGACTACATCCAACTTTGGAGTTTTAGAAAGAATAATGGAACATCCCCACCTCAACTTTGCTTCGCATTGGTCAAGCTCGACATATCT
mRNA sequenceShow/hide mRNA sequence
ATGCCAGCACCGCTAAGGGATCGCATCGCTGAACTTGGCGGCTACGACATCCAAATAGTGATCCAAAAGCGATTGCAGGACACTGACCTTAATCGGAACCATGGTCGATT
GTCAATTCCGATTAAGAAGCTCCTTAATGATTTCGCTACAGAGGAGGAGAAGAAGGTGTTGGACCAACAAGACGAACATCAAAAGAACAAAAGTGGAGTGAGCGCGCTGA
TTCTTGATCCTTGTTTGCGAGAGAGCGTCATTCATGTGAAGAAGTGGAAGATCGGAAGCCGCGAAATCTACTGCTTGGTGTCTCAGTGGAACGCTTTGGCGCAACAAAAT
TCCTTGGAAAGTGGAGACTACATCCAACTTTGGAGTTTTAGAAAGAATAATGGAACATCCCCACCTCAACTTTGCTTCGCATTGGTCAAGCTCGACATATCT
Protein sequenceShow/hide protein sequence
MPAPLRDRIAELGGYDIQIVIQKRLQDTDLNRNHGRLSIPIKKLLNDFATEEEKKVLDQQDEHQKNKSGVSALILDPCLRESVIHVKKWKIGSREIYCLVSQWNALAQQN
SLESGDYIQLWSFRKNNGTSPPQLCFALVKLDIS