; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016834 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016834
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationscaffold9_1:340972..341619
RNA-Seq ExpressionMS016834
SyntenyMS016834
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]2.6e-4981.25Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRD VGIDYKRSSSFP A G AE+     SD ERKNLEKLK N
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASF
         WW RSNSAFLNEPPVLDGAAKAYA+ +
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASF

XP_022144322.1 uncharacterized protein LOC111014033 [Momordica charantia]7.0e-7197.83Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLMAGWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASFKLNNSNGIGA
        DWW RSNSAFLNEPPVLDGAAKAYAASFKLN+SNGIGA
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASFKLNNSNGIGA

XP_023002545.1 uncharacterized protein LOC111496358 [Cucurbita maxima]2.0e-4981.25Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRD VGIDYKRSSSFP A G AE+     SD ERKNLEKLK N
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASF
         WW RSNSAFLNEPPVLDGAAKAYA+ +
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASF

XP_023536775.1 uncharacterized protein LOC111798054 [Cucurbita pepo subsp. pepo]9.9e-4979.69Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRA+SMP    VDRD VGIDYKRSSSFP A G AE+     SD ERKNLE LK N
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASF
         WW RSNSAFLNEPPVLDGAAKAYA+ +
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASF

XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]4.0e-5071.23Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM+GWNSPV DPKSVKFKRNRSLTK+EIEAYW+SK+K EEEHLRAISMPVD ++DR+ VGIDYKRSSSFPPA   + E     +D ER+NLEKLK  
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYA--------ASFKLNNSNGIGA
         WW RSNSAFLNEPPVLDGA K YA        AS KLN+SNG+G+
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYA--------ASFKLNNSNGIGA

TrEMBL top hitse value%identityAlignment
A0A0A0LRI3 Uncharacterized protein3.8e-4668.71Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPA-NGTAEEVFVNRSDFERKNLEKLKP
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLE+EHLRA+S+PVD   D + VG+DYKRSSSFPPA +  A E     +  +RKNLE+LK 
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPA-NGTAEEVFVNRSDFERKNLEKLKP

Query:  NDWWMRSNSAFLNEPPVLDGAAKAY--------AASFKLNNSNGIGA
          WW RSNSAFLNEPPVLDGA+KA          AS KLN+SNG+GA
Subjt:  NDWWMRSNSAFLNEPPVLDGAAKAY--------AASFKLNNSNGIGA

A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A8.4e-4669.18Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM GW+SPV DPKSVKFKRNRSLTKEEI+AYW+SKRKLEEEHLRAIS+PVD + DR+ VGIDYKRSSSFPPA   A E     +  +RKNLE+L+  
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAY--------AASFKLNNSNGIGA
         WW RSNSAFLNEPPVLDGA+KA          AS KLN++NG+GA
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAY--------AASFKLNNSNGIGA

A0A6J1CTD0 uncharacterized protein LOC1110140333.4e-7197.83Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLMAGWNSPV DPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASFKLNNSNGIGA
        DWW RSNSAFLNEPPVLDGAAKAYAASFKLN+SNGIGA
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASFKLNNSNGIGA

A0A6J1GI71 uncharacterized protein LOC1114544248.2e-4980.47Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VD D VGIDYKRSSSFP A G AE+     SD ERKNLEKLK N
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASF
         WW RSNSAFLNEPPVLDGAAKAYA+ +
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASF

A0A6J1KP90 uncharacterized protein LOC1114963589.6e-5081.25Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRD VGIDYKRSSSFP A G AE+     SD ERKNLEKLK N
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPN

Query:  DWWMRSNSAFLNEPPVLDGAAKAYAASF
         WW RSNSAFLNEPPVLDGAAKAYA+ +
Subjt:  DWWMRSNSAFLNEPPVLDGAAKAYAASF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein7.6e-1536.64Show/hide
Query:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKP
        MGSLM+GW+S V DPKSV  +R +SLT+EEI+ +W++K+K  EEEH++A S  V             + + S      + +++F N+S          K 
Subjt:  MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRK-LEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKP

Query:  NDWWMRSNSAFLNEPPVLDGAAKAYAASFKL
        + WW ++  AFLNEP   +G    Y + FK+
Subjt:  NDWWMRSNSAFLNEPPVLDGAAKAYAASFKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTAATGGCCGGATGGAACTCTCCCGTCCATGATCCTAAATCAGTCAAGTTCAAGAGGAATCGATCGCTTACCAAAGAGGAAATCGAAGCTTACTGGAGATC
GAAGAGGAAGTTGGAGGAAGAGCATCTCAGAGCGATTTCTATGCCGGTGGATCCTCATGTTGATCGCGATGTGGTCGGAATAGATTACAAAAGATCGAGTTCGTTTCCGC
CTGCGAACGGCACGGCGGAAGAAGTATTTGTGAATCGGAGCGATTTCGAGAGGAAAAACCTAGAGAAATTGAAGCCAAATGACTGGTGGATGAGGAGCAACTCGGCTTTT
CTGAATGAACCGCCGGTCCTCGACGGCGCTGCCAAAGCTTACGCGGCCTCGTTCAAGTTGAATAACAGTAACGGAATCGGTGCT
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTAATGGCCGGATGGAACTCTCCCGTCCATGATCCTAAATCAGTCAAGTTCAAGAGGAATCGATCGCTTACCAAAGAGGAAATCGAAGCTTACTGGAGATC
GAAGAGGAAGTTGGAGGAAGAGCATCTCAGAGCGATTTCTATGCCGGTGGATCCTCATGTTGATCGCGATGTGGTCGGAATAGATTACAAAAGATCGAGTTCGTTTCCGC
CTGCGAACGGCACGGCGGAAGAAGTATTTGTGAATCGGAGCGATTTCGAGAGGAAAAACCTAGAGAAATTGAAGCCAAATGACTGGTGGATGAGGAGCAACTCGGCTTTT
CTGAATGAACCGCCGGTCCTCGACGGCGCTGCCAAAGCTTACGCGGCCTCGTTCAAGTTGAATAACAGTAACGGAATCGGTGCT
Protein sequenceShow/hide protein sequence
MGSLMAGWNSPVHDPKSVKFKRNRSLTKEEIEAYWRSKRKLEEEHLRAISMPVDPHVDRDVVGIDYKRSSSFPPANGTAEEVFVNRSDFERKNLEKLKPNDWWMRSNSAF
LNEPPVLDGAAKAYAASFKLNNSNGIGA