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MS016868 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016868
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At1g25360-like
Genome locationscaffold9_1:674275..674439
RNA-Seq ExpressionMS016868
SyntenyMS016868
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144374.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]2.0e-1685.45Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MR+ALEVR +AN YAAQL LCSPLNPASYSLA+T HAHMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
XP_022997582.1 pentatricopeptide repeat-containing protein At1g25360-like isoform X1 [Cucurbita maxima]1.4e-1476.36Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  H HMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
XP_023547212.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo]1.4e-1476.36Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  H HMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
XP_038884005.1 pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida]4.9e-1578.18Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
XP_038886633.1 pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida]4.9e-1578.18Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL+VR +ANRYAAQL LC P NP+SYSLA+T HAHMIASGFKPRG  +NRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
TrEMBL top hitse value%identityAlignment
A0A1S3BBZ8 pentatricopeptide repeat-containing protein At1g25360-like8.9e-1576.36Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
A0A5A7VDP5 Pentatricopeptide repeat-containing protein8.9e-1576.36Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYA +L LCSP +PAS+SLA+  HAHMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
A0A6J1CT83 pentatricopeptide repeat-containing protein At1g25360-like9.5e-1785.45Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MR+ALEVR +AN YAAQL LCSPLNPASYSLA+T HAHMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
A0A6J1K5H2 pentatricopeptide repeat-containing protein At1g25360-like isoform X16.8e-1576.36Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  H HMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
A0A6J1KEC4 pentatricopeptide repeat-containing protein At1g25360-like isoform X26.8e-1576.36Show/hide
Query:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        MRNAL++R VANRYAA+L LCSP +PAS+SLA+  H HMIASGFKPRG FLNRLL
Subjt:  MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
SwissProt top hitse value%identityAlignment
Q9FRI5 Pentatricopeptide repeat-containing protein At1g253602.3e-0753.06Show/hide
Query:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        VR +ANRYAA L LC PL   S  LA+  H ++I  GF+PR   LNRL+
Subjt:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
Arabidopsis top hitse value%identityAlignment
AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein1.6e-0853.06Show/hide
Query:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL
        VR +ANRYAA L LC PL   S  LA+  H ++I  GF+PR   LNRL+
Subjt:  VRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATGCCTTGGAAGTCCGCACGGTGGCAAACCGGTACGCCGCACAGTTGCTACTCTGTTCCCCACTGAATCCGGCTTCCTATTCGCTTGCTCAGACTGCCCATGC
CCACATGATTGCTTCCGGATTTAAACCTCGTGGGGATTTCCTCAATCGCCTCCTC
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATGCCTTGGAAGTCCGCACGGTGGCAAACCGGTACGCCGCACAGTTGCTACTCTGTTCCCCACTGAATCCGGCTTCCTATTCGCTTGCTCAGACTGCCCATGC
CCACATGATTGCTTCCGGATTTAAACCTCGTGGGGATTTCCTCAATCGCCTCCTC
Protein sequenceShow/hide protein sequence
MRNALEVRTVANRYAAQLLLCSPLNPASYSLAQTAHAHMIASGFKPRGDFLNRLL