CuGenDBv2

Gene ID	MS016893
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold9_1:862775..862915
RNA-Seq Expression	MS016893
Synteny	MS016893
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AAS60076.1 photosystem II CP43 protein, partial [Luzuriaga radicans]

8.4e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

YP_009435235.1 photosystem II 43 kDa protein [Lobelia malowensis]

8.4e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

YP_009828926.1 PsbC [Impatiens hawkeri]

8.4e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

YP_009917162.1 photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva]

8.4e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

YP_010119730.1 photosystem II CP43 chlorophyll apoprotein [Hemsleya zhejiangensis]

8.4e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

TrEMBL top hits

e value

%identity

Alignment

A0A0A6Z838 Photosystem II CP43 reaction center protein

4.0e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

A0A0G3FF74 Photosystem II CP43 reaction center protein

4.0e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

A0A0U2ICZ5 Photosystem II CP43 reaction center protein

4.0e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

A0A251U4G7 Putative photosystem antenna protein-like protein

1.4e-16

91.49

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNAQLINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

A0A411D8D7 Photosystem II CP43 reaction center protein

4.0e-16

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

SwissProt top hits

e value

%identity

Alignment

A6MM32 Photosystem II CP43 reaction center protein

1.1e-18

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

A9LYI1 Photosystem II CP43 reaction center protein

1.1e-18

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

Q3V538 Photosystem II CP43 reaction center protein

1.1e-18

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

Q70Y07 Photosystem II CP43 reaction center protein

1.1e-18

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

Q7YJX6 Photosystem II CP43 reaction center protein

1.1e-18

89.36

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Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

8.6e-19

87.23

Show/hide

Query:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
        MKTLYSLRRFY +ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Subjt:  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

Sequences

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CDS sequence

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ATGAAAACCTTATATTCCCTGAGAAGGTTCTACCCTATGGAAACACTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACTACTAGTTTCGCTTGGTGGGT
AGGGAATGCCCAACTTATCAATTTATGCGGT

mRNA sequence

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ATGAAAACCTTATATTCCCTGAGAAGGTTCTACCCTATGGAAACACTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACTACTAGTTTCGCTTGGTGGGT
AGGGAATGCCCAACTTATCAATTTATGCGGT

Protein sequence

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MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG

MS016893 (gene) of Bitter gourd (TR) v1 genome