CuGenDBv2

Gene ID	MS016940
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	shootin-1-like
Genome location	scaffold976:55247..59717
RNA-Seq Expression	MS016940
Synteny	MS016940
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575171.1 hypothetical protein SDJN03_25810, partial [Cucurbita argyrosperma subsp. sororia]

6.7e-72

74.61

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P +TAPS PT PLPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK P+FRNCKAANEIRERIKLLQDMY +MMA+T+E+LYIEKT+N+L+GQS
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        LSVDNQD +R RE HHD K G KSS +SYESN+      EKQ  NDG +SG YIVGGSAFGWNFI F G EPVYYGVTKE +R+KNPIVSSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

XP_022156104.1 uncharacterized protein LOC111023072 [Momordica charantia]

6.4e-99

99.47

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Query:  PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQ
        PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNIL+GQ
Subjt:  PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQ

Query:  SLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        SLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
Subjt:  SLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

XP_023006667.1 uncharacterized protein LOC111499323 [Cucurbita maxima]

1.1e-71

74.61

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P +TAPS PT PLPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK P+FRNCKAANEIRERIKLLQDMY LMMA+T+E+LYIEKT+N+L+GQS
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        +SVDNQD +R RE +HD K G KSS +SYESN+      EKQ  NDG +SG YIVGGSAFGWNFI F G EPVYYGVTKE +REKNPIVSSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

XP_023548253.1 uncharacterized protein LOC111806942 [Cucurbita pepo subsp. pepo]

1.5e-71

75.13

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P +TAPS PT PLPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK P+FRNCKAANEIRERIKLLQDMY LMMA+T+E+LYIEKT+ +L+GQS
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        LSVDNQD +R RE HHD K G KSS +SYESN+      EKQ  NDG +SG YIVGGSAFGWNFI F G EPVYYGVTKE +REKNPIVSSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

XP_038874738.1 uncharacterized protein LOC120067276 [Benincasa hispida]

3.0e-72

76.17

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P +TAPS   Q LPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK PDFRNCKAANEIRERIK+LQDMY LMMA+T+ETLYIEKT+N+L+GQS
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESN-----YLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
         SVDNQD RR RE HHD KLGDKSS +SYESN       EKQR NDG  SG+YIVGGSAFGWNFI F G EPVYYG+TKE +REKNPIVSSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESN-----YLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7F0 Uncharacterized protein

2.8e-60

64.77

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Query:  QTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKT-TNILNGQS
        +T A + P+Q LPPLPPK KKRP DR+ ++Q++KMR VI+DLRPHF+EV+K PDFRNCKAA EIRERIK+LQD+Y +MMA+T+ETLYIEKT +N+L+G +
Subjt:  QTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKT-TNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYE-----SNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
                   RE HHD  LGDKSS +SYE     SN  EKQR NDG  SG+Y+VGGSAFGWNFI F G EPVYYG+TKE +REKNPI SSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYE-----SNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

A0A1S3C7F7 uncharacterized protein LOC103497729

8.0e-63

68.39

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P TTAPS   Q LPPLPPK KKRPLDR+ +VQ++KMRAVI+DLRPHF+EV+K PDFRNCKAA EIRERIK+LQDMY  MM++T+ETLYIEKT N+L+G +
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESN-----YLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
                   RE HHD KLGDKSS +SYESN       EKQR NDG  SG+Y+VGGSAFGWNFI F G EPVYYG+TKE +REKNPI SSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESN-----YLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

A0A6J1DSC5 uncharacterized protein LOC111023072

3.1e-99

99.47

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Query:  PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQ
        PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNIL+GQ
Subjt:  PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQ

Query:  SLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        SLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
Subjt:  SLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

A0A6J1H517 uncharacterized protein LOC111460466

1.2e-71

74.09

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P +TAPS PT PLPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK P+FRNCKAANEIRERIKLLQDMY +MMA+T+E+LYIEKT+N+L+GQS
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        LSVDNQD +R RE HHD K G KSS +SYESN+      EK   NDG +SG YIVGGSAFGWNFI F G EPVYYGVTKE +R+KNPIVSSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

A0A6J1KWG6 uncharacterized protein LOC111499323

5.5e-72

74.61

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Query:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS
        P +TAPS PT PLPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK P+FRNCKAANEIRERIKLLQDMY LMMA+T+E+LYIEKT+N+L+GQS
Subjt:  PQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQS

Query:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES
        +SVDNQD +R RE +HD K G KSS +SYESN+      EKQ  NDG +SG YIVGGSAFGWNFI F G EPVYYGVTKE +REKNPIVSSES
Subjt:  LSVDNQDNRRPREPHHDVKLGDKSSVRSYESNY-----LEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G01730.1 unknown protein

7.5e-21

37.11

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Query:  PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQ---YSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNIL
        P Q TAP P T    P   + +KR L+ ++ ++   Y KMR ++KDLRPH +EVL+ PD RN KA  EI+E++KL+  +Y+ M+  + +     K+ ++ 
Subjt:  PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQ---YSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNIL

Query:  NGQSLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITF--MGNEPVYYGVTKEAYREKNPIVSSES
        NG++ +                     S +RS E+    ++  +DG   G  +VGGSAFGWNFIT    G EPVY G++KE YR  +PI+  E+
Subjt:  NGQSLSVDNQDNRRPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITF--MGNEPVYYGVTKEAYREKNPIVSSES

Sequences

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CDS sequence

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CCTCCTCAAACCACAGCTCCATCTCCACCTACTCAGCCATTGCCTCCTCTTCCTCCCAAATCCAAGAAGAGGCCACTCGACAGAAGCGTTTTTGTCCAATATTCTAAGAT
GCGCGCCGTTATTAAGGATCTTCGTCCTCATTTTGTCGAGGTTTTGAAGGCTCCCGACTTCCGCAACTGCAAGGCAGCTAATGAAATTCGAGAAAGAATAAAGCTTCTTC
AAGACATGTATAAATTGATGATGGCATCAACTGCAGAAACTCTTTACATCGAGAAGACAACTAACATACTCAATGGTCAGTCCTTGTCAGTTGATAATCAAGATAATCGA
CGACCCCGAGAGCCACACCATGACGTTAAATTGGGGGATAAGTCATCCGTAAGGTCATATGAAAGTAATTACCTTGAAAAGCAGCGGGTGAATGATGGGCATTCTTCTGG
GGCCTATATCGTTGGCGGATCCGCGTTCGGCTGGAATTTCATCACCTTCATGGGGAATGAACCGGTATACTATGGCGTTACGAAGGAAGCATATCGAGAAAAAAATCCCA
TTGTATCATCAGAATCA

mRNA sequence

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Protein sequence

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PPQTTAPSPPTQPLPPLPPKSKKRPLDRSVFVQYSKMRAVIKDLRPHFVEVLKAPDFRNCKAANEIRERIKLLQDMYKLMMASTAETLYIEKTTNILNGQSLSVDNQDNR
RPREPHHDVKLGDKSSVRSYESNYLEKQRVNDGHSSGAYIVGGSAFGWNFITFMGNEPVYYGVTKEAYREKNPIVSSES

MS016940 (gene) of Bitter gourd (TR) v1 genome