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MS016949 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016949
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein of unknown function (DUF3245)
Genome locationscaffold976:158773..159030
RNA-Seq ExpressionMS016949
SyntenyMS016949
Gene Ontology termsNA
InterPro domainsIPR021641 - Protein of unknown function DUF3245


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458228.1 PREDICTED: uncharacterized protein LOC103497715 [Cucumis melo]5.1e-2775.86Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAKV+R FR+GPSNDPLDRKLYAK DAGK+QAARK  E+TP+L+N+DD+ DD+EEESRTA+F+KKRAA PV MPPF+ KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

XP_022157679.1 uncharacterized protein LOC111024338 [Momordica charantia]3.5e-3697.67Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAKVSRQFRSGPSNDPLDRKLYAK DAGKRQAARKTKEDT ILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

XP_022964046.1 uncharacterized protein LOC111464189 [Cucurbita moschata]5.1e-2778.16Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDTP++NNEDD+D DDEEES TAMFDKKRA T V MPP  +KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

XP_023000602.1 uncharacterized protein LOC111494843 [Cucurbita maxima]3.0e-2779.31Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDT +LNNEDD+D DDEEES+TAMFDKKRA T V MPPF +KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

XP_023514247.1 uncharacterized protein LOC111778569 isoform X1 [Cucurbita pepo subsp. pepo]2.7e-2880.46Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDTP+LNNEDD+D DDEEES+TAMFDKKRA T V MPPF +KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

TrEMBL top hitse value%identityAlignment
A0A1S3C7D1 uncharacterized protein LOC1034977152.5e-2775.86Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAKV+R FR+GPSNDPLDRKLYAK DAGK+QAARK  E+TP+L+N+DD+ DD+EEESRTA+F+KKRAA PV MPPF+ KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

A0A5D3BV19 Putative RNA binding protein2.5e-2775.86Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAKV+R FR+GPSNDPLDRKLYAK DAGK+QAARK  E+TP+L+N+DD+ DD+EEESRTA+F+KKRAA PV MPPF+ KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

A0A6J1DX89 uncharacterized protein LOC1110243381.7e-3697.67Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAKVSRQFRSGPSNDPLDRKLYAK DAGKRQAARKTKEDT ILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

A0A6J1HHS0 uncharacterized protein LOC1114641892.5e-2778.16Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDTP++NNEDD+D DDEEES TAMFDKKRA T V MPP  +KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

A0A6J1KE33 uncharacterized protein LOC1114948431.4e-2779.31Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR
        RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDT +LNNEDD+D DDEEES+TAMFDKKRA T V MPPF +KKK+R
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G61370.1 Protein of unknown function (DUF3245)3.2e-1154.05Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNN--EDDEDDDEEESRTAMFDKKRAAT
        RLGLGA+VSRQ +  PS+DPLD+KL AKF A KR+ AR   E      N  +D EDDDE ES++  F KK+  T
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNN--EDDEDDDEEESRTAMFDKKRAAT

AT4G07940.1 Protein of unknown function (DUF3245)7.1e-1151.95Show/hide
Query:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNN--EDDEDDDEEESRTAMF--DKKRAATP
        +LGLGA+VSRQ +  PS+DPLD+KL AKF AGKR+ AR   E      N  +D+ED DE ES++  F   KK  +TP
Subjt:  RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNN--EDDEDDDEEESRTAMF--DKKRAATP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGACTTGGACTTGGAGCCAAAGTATCACGCCAATTCAGAAGTGGACCTTCTAATGACCCGCTTGACAGAAAATTATATGCCAAATTTGATGCTGGGAAAAGGCAAGCTGC
TAGAAAGACAAAGGAGGATACCCCGATACTCAACAATGAAGATGACGAGGATGATGATGAAGAAGAGAGTAGAACTGCCATGTTCGATAAGAAGCGGGCAGCAACTCCGG
TAGCTATGCCTCCTTTTCGGTCCAAGAAAAAACAGAGG
mRNA sequenceShow/hide mRNA sequence
AGACTTGGACTTGGAGCCAAAGTATCACGCCAATTCAGAAGTGGACCTTCTAATGACCCGCTTGACAGAAAATTATATGCCAAATTTGATGCTGGGAAAAGGCAAGCTGC
TAGAAAGACAAAGGAGGATACCCCGATACTCAACAATGAAGATGACGAGGATGATGATGAAGAAGAGAGTAGAACTGCCATGTTCGATAAGAAGCGGGCAGCAACTCCGG
TAGCTATGCCTCCTTTTCGGTCCAAGAAAAAACAGAGG
Protein sequenceShow/hide protein sequence
RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR