; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS016973 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016973
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase (Reversetranscriptase)-related family protein
Genome locationscaffold197:135217..135402
RNA-Seq ExpressionMS016973
SyntenyMS016973
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER28724.1 RNA-directed DNA polymerase (reversetranscriptase)-related family protein [Striga asiatica]2.2e-1148.39Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W L+++ KI++FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  VW
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
GER31074.1 RNA-directed DNA polymerase-like protein [Striga asiatica]1.8e-1045.16Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W LK+  K+K+FIW+ F++ +P   NL K+G++V + C++CG+  ET  HVLF C+RA+ +W
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
GER49483.1 RNA-directed DNA polymerase (reversetranscriptase)-related family protein [Striga asiatica]9.7e-1250Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W L+++ KIK+FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  VW
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.8e-1364.71Show/hide
Query:  FIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        F+WR+F+DC+P M NL+K+G+D    C VCGKQ+ETT H LFKCKRA+EVW
Subjt:  FIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
XP_033139897.1 uncharacterized protein LOC117131724 [Brassica rapa]1.8e-1046.77Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        WKLKI  K++ F W++  + +P   NL K+G+  YS CQVCG+++ET +H+L +C+ ARE+W
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
TrEMBL top hitse value%identityAlignment
A0A5A7P850 RNA-directed DNA polymerase (Reversetranscriptase)-related family protein1.0e-1148.39Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W L+++ KI++FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  VW
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
A0A5A7PA33 RNA-directed DNA polymerase (Reversetranscriptase)-related family protein1.5e-1046.77Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W L+++ KIK+FIWR F+D +P   NL  +G+ + + CQ CG+ VET  H++F C RA  VW
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
A0A5A7PEH8 RNA-directed DNA polymerase-like protein8.8e-1145.16Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W LK+  K+K+FIW+ F++ +P   NL K+G++V + C++CG+  ET  HVLF C+RA+ +W
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
A0A5A7QVV0 RNA-directed DNA polymerase (Reversetranscriptase)-related family protein4.7e-1250Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        W L+++ KIK+FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  VW
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
A0A6J1CTE3 uncharacterized protein LOC1110145788.5e-1464.71Show/hide
Query:  FIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        F+WR+F+DC+P M NL+K+G+D    C VCGKQ+ETT H LFKCKRA+EVW
Subjt:  FIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25270.1 Ribonuclease H-like superfamily protein1.4e-0835.48Show/hide
Query:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
        WKLK   KIK+F+W++ S  +    NL ++ +  + +C  C ++ ET+ H+ F C  A++VW
Subjt:  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAAACTAAAAATCCAGTCCAAAATTAAGAACTTTATTTGGAGGATTTTTAGTGACTGTATTCCCTTTATGGGGAACTTACTGAAGAAAGGGCTGGACGTGTATTCGAA
GTGTCAGGTTTGTGGAAAGCAGGTTGAAACAACATATCATGTTCTTTTCAAATGTAAAAGAGCGAGAGAAGTGTGG
mRNA sequenceShow/hide mRNA sequence
TGGAAACTAAAAATCCAGTCCAAAATTAAGAACTTTATTTGGAGGATTTTTAGTGACTGTATTCCCTTTATGGGGAACTTACTGAAGAAAGGGCTGGACGTGTATTCGAA
GTGTCAGGTTTGTGGAAAGCAGGTTGAAACAACATATCATGTTCTTTTCAAATGTAAAAGAGCGAGAGAAGTGTGG
Protein sequenceShow/hide protein sequence
WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW