CuGenDBv2

Gene ID	MS016980
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	sigma factor binding protein 2, chloroplastic-like
Genome location	scaffold197:232688..233185
RNA-Seq Expression	MS016980
Synteny	MS016980
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]

3.5e-32

56.91

Show/hide

Query:  MDGGAGTGNP--VLGGVRRRQPTKKKKPP--AMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--AVVGGSDSSGALHKTPADVGGV
        MD G  TG+    L  V RR+PTKK K P   +KKPIKVVYISNPMK+QTSAS FMALVQELTGQDADFPDPSKFP  AV  G+ S+  L+ T +  GG 
Subjt:  MDGGAGTGNP--VLGGVRRRQPTKKKKPP--AMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--AVVGGSDSSGALHKTPADVGGV

Query:  DDGDNNL------PTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFLP-PVIGNFSGLL--PTAAVLYESYAR
        DDG  NL       +L  E+PAED                    SFYD FDDL  P PVIGNFSGLL  P AAV+YES AR
Subjt:  DDGDNNL------PTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFLP-PVIGNFSGLL--PTAAVLYESYAR

KAG7027424.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.7e-32

55.91

Show/hide

Query:  MDGGAGTG-----NPVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGA----LHKTPAD
        MDGG G G     +  LGGVRRR+PTKK K+P   KKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF +     + +GA    LH T A 
Subjt:  MDGGAGTG-----NPVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGA----LHKTPAD

Query:  VGGVDD--GDNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP-------TAAVLYESYA
            D    +NN+P TL VELPAED                    SFYD FDDL L PP+IGNFSG LP        AAV+YESYA
Subjt:  VGGVDD--GDNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP-------TAAVLYESYA

XP_022931925.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]

9.1e-33

57.14

Show/hide

Query:  MDGGAGTG-----NPVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGA----LHKTPAD
        MDGG G G     +  LGGVRRR+PTKK K+P   KKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF +     + +GA    LH T A 
Subjt:  MDGGAGTG-----NPVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGA----LHKTPAD

Query:  VGGVDD--GDNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP---TAAVLYESYA
            D    +NN+P TL VELPAED                    SFYD FDDL L PP+IGNFSG LP    AAV+YESYA
Subjt:  VGGVDD--GDNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP---TAAVLYESYA

XP_022966643.1 uncharacterized protein LOC111466266 [Cucurbita maxima]

1.8e-33

57.92

Show/hide

Query:  MDGGAGTGN----PVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPA--VVGGSDSSGALHKTPADVGG
        MDGG G GN      LGGVRRR+PTKK K+P   KKPIKVVYISNPMK++TSAS FMALVQELTGQDADFPDPSKF +   V G+ + G LH T A   G
Subjt:  MDGGAGTGN----PVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPA--VVGGSDSSGALHKTPADVGG

Query:  VDDG----DNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP-----TAAVLYESYA
         + G    +NN+P TL VELPAED                    SFYD FDDL L PP+IGNFSG LP      AA++YESYA
Subjt:  VDDG----DNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP-----TAAVLYESYA

XP_038882812.1 sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]

4.0e-36

58.99

Show/hide

Query:  MDGGAGTGN--PVLGGVRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF--PAVVGGSDSSGALHKTPADVGGVDD
        M+ GA TGN   +L  V RR+PTKK K P  KKPIKVVYISNPMK+QTSAS+FMALVQELTG+DADFPDPSKF   AV GG+ SS  LH T +  G  + 
Subjt:  MDGGAGTGN--PVLGGVRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF--PAVVGGSDSSGALHKTPADVGGVDD

Query:  G------DNNLPTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDL-FLPPVIGNFSGLLP-TAAVLYESYAR
        G      +NN  +LAVELP +D                    SFYD FDDL F PPVIGNFSGLLP  AAV+YESYAR
Subjt:  G------DNNLPTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDL-FLPPVIGNFSGLLP-TAAVLYESYAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

1.7e-32

56.91

Show/hide

Query:  MDGGAGTGNP--VLGGVRRRQPTKKKKPP--AMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--AVVGGSDSSGALHKTPADVGGV
        MD G  TG+    L  V RR+PTKK K P   +KKPIKVVYISNPMK+QTSAS FMALVQELTGQDADFPDPSKFP  AV  G+ S+  L+ T +  GG 
Subjt:  MDGGAGTGNP--VLGGVRRRQPTKKKKPP--AMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--AVVGGSDSSGALHKTPADVGGV

Query:  DDGDNNL------PTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFLP-PVIGNFSGLL--PTAAVLYESYAR
        DDG  NL       +L  E+PAED                    SFYD FDDL  P PVIGNFSGLL  P AAV+YES AR
Subjt:  DDGDNNL------PTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFLP-PVIGNFSGLL--PTAAVLYESYAR

A0A5A7SJV9 Sigma factor binding protein 2

1.1e-31

56.35

Show/hide

Query:  MDGGAGTGN--PVLGGVRRRQPTKKKKP--PAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--AVVGGSDSSGALHKTPADVGGV
        MD GA TGN    L  V RR+P KK K     +KKPIKVVYISNPMK+QTSASEFMALVQELTGQDADFPDPSKFP  AV   + S+  L+ T +  GG 
Subjt:  MDGGAGTGN--PVLGGVRRRQPTKKKKP--PAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--AVVGGSDSSGALHKTPADVGGV

Query:  DDGDNNL------PTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDL-FLPPVIGNFSGLL--PTAAVLYESYAR
        DDG +NL      P+L  ++PAED                    SFYD FDDL F PPV+GN SGLL  P AAV+YES AR
Subjt:  DDGDNNL------PTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDL-FLPPVIGNFSGLL--PTAAVLYESYAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

3.7e-32

55.43

Show/hide

Query:  MDGGAGTG----NPVLGGVRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF-PAVVGGSDSSGALHKTPADVGGVD
        MDG AGTG    + +L GV RR+PTKK K P   KPIKVVYISNPMK+Q SAS FMALVQ+LTGQDADFPDPS F PA V  + +   +H T AD   + 
Subjt:  MDGGAGTG----NPVLGGVRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF-PAVVGGSDSSGALHKTPADVGGVD

Query:  DGDNNLPTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDL-FLPPVIGNFSGLLPTA---AVLYESYAR
          +NN P+L VE+P ED                    SFYD  DDL F PPVIGN+  LLP A   AVLYESYAR
Subjt:  DGDNNLPTLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDL-FLPPVIGNFSGLLPTA---AVLYESYAR

A0A6J1F0S9 sigma factor binding protein 1, chloroplastic-like

4.4e-33

57.14

Show/hide

Query:  MDGGAGTG-----NPVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGA----LHKTPAD
        MDGG G G     +  LGGVRRR+PTKK K+P   KKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF +     + +GA    LH T A 
Subjt:  MDGGAGTG-----NPVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGA----LHKTPAD

Query:  VGGVDD--GDNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP---TAAVLYESYA
            D    +NN+P TL VELPAED                    SFYD FDDL L PP+IGNFSG LP    AAV+YESYA
Subjt:  VGGVDD--GDNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP---TAAVLYESYA

A0A6J1HSP6 uncharacterized protein LOC111466266

8.9e-34

57.92

Show/hide

Query:  MDGGAGTGN----PVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPA--VVGGSDSSGALHKTPADVGG
        MDGG G GN      LGGVRRR+PTKK K+P   KKPIKVVYISNPMK++TSAS FMALVQELTGQDADFPDPSKF +   V G+ + G LH T A   G
Subjt:  MDGGAGTGN----PVLGGVRRRQPTKK-KKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPA--VVGGSDSSGALHKTPADVGG

Query:  VDDG----DNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP-----TAAVLYESYA
         + G    +NN+P TL VELPAED                    SFYD FDDL L PP+IGNFSG LP      AA++YESYA
Subjt:  VDDG----DNNLP-TLAVELPAEDVTAAAAVAVAAAAAGECSDESFYDAFDDLFL-PPVIGNFSGLLP-----TAAVLYESYA

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

1.4e-07

56.67

Show/hide

Query:  RRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPAV
        R  P +K+K     KPIKV YISNPM+++T  S+F  LVQELTGQD AD  P P+ F AV
Subjt:  RRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPAV

Q9LDH1 Sigma factor binding protein 1, chloroplastic

3.3e-09

65.31

Show/hide

Query:  VRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDA
        V R+ P +KKK  +  KPIKV YISNPM++QT AS+F  LVQELTGQDA
Subjt:  VRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDA

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

9.8e-09

56.67

Show/hide

Query:  RRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPAV
        R  P +K+K     KPIKV YISNPM+++T  S+F  LVQELTGQD AD  P P+ F AV
Subjt:  RRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPAV

AT3G56710.1 sigma factor binding protein 1

2.3e-10

65.31

Show/hide

Query:  VRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDA
        V R+ P +KKK  +  KPIKV YISNPM++QT AS+F  LVQELTGQDA
Subjt:  VRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGGCGGCGCCGGCACCGGCAACCCAGTTCTCGGCGGCGTCCGCCGGCGGCAGCCCACAAAGAAAAAGAAGCCTCCGGCCATGAAAAAACCCATCAAAGTAGTGTA
CATATCAAACCCCATGAAGATCCAGACCAGTGCTTCTGAATTCATGGCCTTGGTCCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGATCCATCTAAATTTCCGGCCG
TCGTCGGTGGCAGCGACAGCAGCGGCGCCCTCCACAAGACTCCTGCCGACGTTGGCGGCGTCGATGATGGCGATAATAATCTCCCTACACTTGCCGTGGAGCTCCCGGCG
GAGGATGTTACGGCGGCTGCAGCGGTGGCGGTGGCAGCCGCCGCGGCTGGTGAGTGCTCAGACGAGAGTTTTTATGATGCATTTGATGACCTGTTTCTTCCTCCGGTGAT
CGGAAACTTCTCCGGGCTGCTTCCGACGGCGGCGGTGCTCTATGAATCTTATGCAAGG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGGAGTGNPVLGGVRRRQPTKKKKPPAMKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPAVVGGSDSSGALHKTPADVGGVDDGDNNLPTLAVELPA
EDVTAAAAVAVAAAAAGECSDESFYDAFDDLFLPPVIGNFSGLLPTAAVLYESYAR

MS016980 (gene) of Bitter gourd (TR) v1 genome