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MS016991 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS016991
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold197:374638..374928
RNA-Seq ExpressionMS016991
SyntenyMS016991
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PQM35320.1 uncharacterized protein Pyn_06201 [Prunus yedoensis var. nudiflora]9.5e-0639.39Show/hide
Query:  SSTNWRPAAVG-LKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG
        SST+W P ++G LKLN D AC  +  +  LG + R+  G L+ A    +   ++  + ELLAIREGL FA   G++ L+VE+N   AI+ +   +E  G
Subjt:  SSTNWRPAAVG-LKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.4e-1045.83Show/hide
Query:  STNWRPAA-VGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG
        S  W P     +K+N+DAAC + ST LG I RD  G LLVA    LP+P  PL AE+  I E L  A S  + +L+VES+   AI L++GDL ++G
Subjt:  STNWRPAA-VGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.8e-1250.54Show/hide
Query:  WRP-AAVGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG
        WRP ++V LKLNTDAAC   ST  G I RD S  L+ A    +P P +PLLAE+  I EGL FA +  F  L VES+ L AI L+R ++ T G
Subjt:  WRP-AAVGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG

XP_035545034.1 uncharacterized protein LOC118348150 [Juglans regia]2.1e-0541.11Show/hide
Query:  WRPAAVG-LKLNTDAACGANS--TRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD
        W P   G LKLN D A  AN    R+G I RD+ G +++  C+       PL  ELLAI  GL   + LG  QL++ES+YL  +  +R D
Subjt:  WRPAAVG-LKLNTDAACGANS--TRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD

XP_042954614.1 uncharacterized protein LOC122291030 [Carya illinoinensis]5.6e-0638.3Show/hide
Query:  WRPAAVG-LKLNTDAAC--GANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETL
        W+P  +G LK+NTD A   G  ++ +G I RDE G++++A C+  P    P+  ELLAI  GL   I LG  +LIVE++ + ++  L  + E++
Subjt:  WRPAAVG-LKLNTDAAC--GANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETL

TrEMBL top hitse value%identityAlignment
A0A314UDF4 RNase H domain-containing protein4.6e-0639.39Show/hide
Query:  SSTNWRPAAVG-LKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG
        SST+W P ++G LKLN D AC  +  +  LG + R+  G L+ A    +   ++  + ELLAIREGL FA   G++ L+VE+N   AI+ +   +E  G
Subjt:  SSTNWRPAAVG-LKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG

A0A6J1BQ49 uncharacterized protein LOC1110047863.1e-1045.83Show/hide
Query:  STNWRPAA-VGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG
        S  W P     +K+N+DAAC + ST LG I RD  G LLVA    LP+P  PL AE+  I E L  A S  + +L+VES+   AI L++GDL ++G
Subjt:  STNWRPAA-VGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG

A0A6J1DPU1 uncharacterized protein LOC1110224263.0e-0540.7Show/hide
Query:  WRPAAVG--LKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLL
        WRP  +G  +K+NTDAA     + +G + RD + + +VA      +   PLL E+LAIREGL  A  LG  +++VES+ L A++L+
Subjt:  WRPAAVG--LKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLL

A0A6J1DX30 uncharacterized protein LOC1110248743.3e-1250.54Show/hide
Query:  WRP-AAVGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG
        WRP ++V LKLNTDAAC   ST  G I RD S  L+ A    +P P +PLLAE+  I EGL FA +  F  L VES+ L AI L+R ++ T G
Subjt:  WRP-AAVGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG

A0A6P9ECH0 uncharacterized protein LOC1183481501.0e-0541.11Show/hide
Query:  WRPAAVG-LKLNTDAACGANS--TRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD
        W P   G LKLN D A  AN    R+G I RD+ G +++  C+       PL  ELLAI  GL   + LG  QL++ES+YL  +  +R D
Subjt:  WRPAAVG-LKLNTDAACGANS--TRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-0535.48Show/hide
Query:  STNWR-PAAVGLKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD
        S  W+ P    +K NTDA     + R  +G+I R+ESG +L  G R+LP     L AEL A+R  +L      + ++I ES+    ++LL  D
Subjt:  STNWR-PAAVGLKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD

AT4G29090.1 Ribonuclease H-like superfamily protein5.6e-0432.63Show/hide
Query:  TSSTNWRPAA-VGLKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD
        +S   WRP     +K NTDA    ++ R  +G++ R+E G++   G R+LP   + L AEL A+R  +L      +  +I ES+    I +L  D
Subjt:  TSSTNWRPAA-VGLKLNTDAACGANSTR--LGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACATCATCTACAAATTGGAGACCGGCCGCTGTTGGTTTGAAATTAAACACTGATGCTGCTTGTGGAGCTAATTCGACGAGGTTGGGATTCATTTTTCGAGATGAATCTGG
TCAATTATTGGTAGCAGGATGTCGGTCGCTACCTCTTCCTTACGCTCCTTTACTCGCTGAGCTTTTGGCCATTCGCGAAGGTCTCCTCTTTGCAATTTCACTGGGATTTT
TGCAACTTATAGTCGAGTCAAATTATCTCACAGCCATATCCCTTCTTCGTGGTGATTTGGAAACCCTCGGT
mRNA sequenceShow/hide mRNA sequence
ACATCATCTACAAATTGGAGACCGGCCGCTGTTGGTTTGAAATTAAACACTGATGCTGCTTGTGGAGCTAATTCGACGAGGTTGGGATTCATTTTTCGAGATGAATCTGG
TCAATTATTGGTAGCAGGATGTCGGTCGCTACCTCTTCCTTACGCTCCTTTACTCGCTGAGCTTTTGGCCATTCGCGAAGGTCTCCTCTTTGCAATTTCACTGGGATTTT
TGCAACTTATAGTCGAGTCAAATTATCTCACAGCCATATCCCTTCTTCGTGGTGATTTGGAAACCCTCGGT
Protein sequenceShow/hide protein sequence
TSSTNWRPAAVGLKLNTDAACGANSTRLGFIFRDESGQLLVAGCRSLPLPYAPLLAELLAIREGLLFAISLGFLQLIVESNYLTAISLLRGDLETLG