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MS017004 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017004
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase
Genome locationscaffold197:582568..582672
RNA-Seq ExpressionMS017004
SyntenyMS017004
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBM04373.1 RNA polymerase beta subunit, partial [Eriocaulon hamiltonianum]1.5e-0674.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
BBM04415.1 RNA polymerase beta subunit, partial [Eriocaulon schimperi]1.5e-0674.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
BBM04446.1 RNA polymerase beta subunit, partial [Eriocaulon taquetii]1.5e-0674.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
BBM04460.1 RNA polymerase beta subunit, partial [Eriocaulon xeranthemum]1.5e-0674.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
QIH29171.1 RNA polymerase beta subunit, partial [Eriocaulon cinereum]1.5e-0674.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
TrEMBL top hitse value%identityAlignment
A0A510IZX3 DNA-directed RNA polymerase (Fragment)7.4e-0774.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
A0A510J024 DNA-directed RNA polymerase (Fragment)7.4e-0774.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
A0A510J0G2 DNA-directed RNA polymerase (Fragment)7.4e-0774.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
A0A510J1Z5 DNA-directed RNA polymerase (Fragment)7.4e-0774.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
A0A510J224 DNA-directed RNA polymerase (Fragment)7.4e-0774.29Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP++IGKSYIFKLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
SwissProt top hitse value%identityAlignment
A6MM28 DNA-directed RNA polymerase subunit beta3.8e-0871.43Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKS I DGRT +PFEQP+IIGKSYI KLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
A8SE86 DNA-directed RNA polymerase subunit beta3.8e-0871.43Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKS I DGRT +PFEQP+IIGKSYI KLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
Q06FW9 DNA-directed RNA polymerase subunit beta2.2e-0868.57Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKSII DGRT +PFEQP+I+G+SYI KLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
Q7YJX8 DNA-directed RNA polymerase subunit beta3.8e-0871.43Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKS I DGRT +PFEQP+IIGKSYI KLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
Q8S8X9 DNA-directed RNA polymerase subunit beta3.8e-0871.43Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKS I DGRT NPFEQP+IIGK YI KLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta1.0e-0868.57Show/hide
Query:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD
        + GKS I DGRT +PFEQP+IIGK YI KLIH+ D
Subjt:  FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTATGGGAAAAAGCATAATATTAGATGGAAGAACGGAAAATCCTTTTGAACAACCTATTATAATAGGAAAGTCTTATATCTTTAAATTAATTCATCGAAGAGAT
mRNA sequenceShow/hide mRNA sequence
TTTATGGGAAAAAGCATAATATTAGATGGAAGAACGGAAAATCCTTTTGAACAACCTATTATAATAGGAAAGTCTTATATCTTTAAATTAATTCATCGAAGAGAT
Protein sequenceShow/hide protein sequence
FMGKSIILDGRTENPFEQPIIIGKSYIFKLIHRRD