; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017020 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017020
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationscaffold197:680838..681191
RNA-Seq ExpressionMS017020
SyntenyMS017020
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4488.98Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        +LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDV VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]1.6e-52100Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]1.1e-4589.83Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        +LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKEDV VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

XP_022967912.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima]5.7e-4590.52Show/hide
Query:  LMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLR
        LM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLR
Subjt:  LMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLR

Query:  KKGRWPPSKMKKLKNV
        KKGRWPPSKMKKLKNV
Subjt:  KKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]4.3e-4588.98Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        +LLM+P GFQPK FNGVRLRN SFVENT S  VKA SEID TGETDSNEP+P AEAKKEDVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein1.8e-4487.29Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        +LLM+P+GFQPK FNGVRLRN SFVENTASL+VKA SE D TGETDS++ QP AEAKKEDVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A5D3CEM6 50S ribosomal protein 58.8e-4486.44Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        +LLM+P+GFQPK FNGVRLRN  FVENTASL+VKA SE D TGE DS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic8.0e-53100Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like5.5e-4689.83Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH
        +LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKEDV VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRH
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRH

Query:  LRKKGRWPPSKMKKLKNV
        LRKKGRWPPSKMKKLKNV
Subjt:  LRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like2.7e-4590.52Show/hide
Query:  LMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLR
        LM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDVPVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLR
Subjt:  LMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLR

Query:  KKGRWPPSKMKKLKNV
        KKGRWPPSKMKKLKNV
Subjt:  KKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic4.1e-1473.13Show/hide
Query:  AEAKKED--VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        +E+KKE   V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+ V
Subjt:  AEAKKED--VPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.2e-1357.5Show/hide
Query:  IDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        +    E  + E    ++ ++ ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL+RKR LRK+G WPPSKMKKLKNV
Subjt:  IDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.7e-1551.64Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVK-ATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKTRMKLAKKIRLRRKRLV
        +L ++P   + K  N V L   S   +   ++VK A S +DG       EP+    A    VPVDKLPLESK  +    LE + +MKLAKKIRLRRKRLV
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVK-ATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKTRMKLAKKIRLRRKRLV

Query:  RKRHLRKKGRWPPSKMKKLKNV
        RKR +RKKGRWPPSKMKK KNV
Subjt:  RKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.2e-1651.64Show/hide
Query:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVK-ATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKTRMKLAKKIRLRRKRLV
        +L ++P   + K  N V L   S   +   ++VK A S +DG       EP+    A    VPVDKLPLESK  +    LE + +MKLAKKIRLRRKRLV
Subjt:  ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVK-ATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQER---LEQKTRMKLAKKIRLRRKRLV

Query:  RKRHLRKKGRWPPSKMKKLKNV
        RKR +RKKGRWPPSKMKK KNV
Subjt:  RKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTTGCTTATGAGGCCTGTTGGTTTTCAGCCAAAAATTTTTAATGGAGTTCGACTTCGAAATGTCTCTTTTGTTGAAAATACGGCGTCATTGATTGTCAAAGCTACGTC
TGAGATTGATGGTACGGGAGAGACTGACAGTAATGAACCGCAGCCCCCTGCAGAAGCTAAAAAAGAGGATGTTCCAGTTGACAAACTTCCCTTAGAATCAAAGCTCCAGG
AGAGACTGGAGCAGAAGACGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCA
AAGATGAAGAAGTTGAAGAATGTT
mRNA sequenceShow/hide mRNA sequence
ATTTTGCTTATGAGGCCTGTTGGTTTTCAGCCAAAAATTTTTAATGGAGTTCGACTTCGAAATGTCTCTTTTGTTGAAAATACGGCGTCATTGATTGTCAAAGCTACGTC
TGAGATTGATGGTACGGGAGAGACTGACAGTAATGAACCGCAGCCCCCTGCAGAAGCTAAAAAAGAGGATGTTCCAGTTGACAAACTTCCCTTAGAATCAAAGCTCCAGG
AGAGACTGGAGCAGAAGACGAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCA
AAGATGAAGAAGTTGAAGAATGTT
Protein sequenceShow/hide protein sequence
ILLMRPVGFQPKIFNGVRLRNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMKLAKKIRLRRKRLVRKRHLRKKGRWPPS
KMKKLKNV