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MS017043 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017043
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncleavage stimulation factor subunit 77 isoform X2
Genome locationscaffold197:854406..854688
RNA-Seq ExpressionMS017043
SyntenyMS017043
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442046.1 PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis melo]3.6e-1385.71Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK  SNKLLD LKYNVEVAE VA +AQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
XP_011653953.1 cleavage stimulation factor subunit 77 [Cucumis sativus]7.3e-1487.76Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK  SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
XP_022154466.1 cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia]3.5e-1695.92Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
XP_022154467.1 cleavage stimulation factor subunit 77 isoform X2 [Momordica charantia]3.5e-1695.92Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
XP_038881157.1 cleavage stimulation factor subunit 77 [Benincasa hispida]7.3e-1487.76Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK  SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
TrEMBL top hitse value%identityAlignment
A0A0A0L2S4 Uncharacterized protein3.5e-1487.76Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK  SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
A0A1S3B5G2 cleavage stimulation factor subunit 77 isoform X11.7e-1385.71Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK  SNKLLD LKYNVEVAE VA +AQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
A0A1S4DUB4 cleavage stimulation factor subunit 77 isoform X21.7e-1385.71Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK  SNKLLD LKYNVEVAE VA +AQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
A0A6J1DLS0 cleavage stimulation factor subunit 77 isoform X21.7e-1695.92Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
A0A6J1DNS9 cleavage stimulation factor subunit 77 isoform X11.7e-1695.92Show/hide
Query:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Subjt:  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
SwissProt top hitse value%identityAlignment
Q8GUP1 Cleavage stimulation factor subunit 779.3e-0458.33Show/hide
Query:  KYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        KY VE AE +A  A   PI +ATP+YEQLL++YPT+
Subjt:  KYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Arabidopsis top hitse value%identityAlignment
AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.6e-0558.33Show/hide
Query:  KYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
        KY VE AE +A  A   PI +ATP+YEQLL++YPT+
Subjt:  KYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTATTCATGTAACTTCCATGTTCAGGATAAAGCAGCCAGTAATAAACTTTTGGATAATTTGAAGTACAATGTTGAAGTGGCCGAAAAAGTTGCTAATGACGCTCAGCG
CTTGCCAATATTGGAGGCGACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCT
mRNA sequenceShow/hide mRNA sequence
ATTTATTCATGTAACTTCCATGTTCAGGATAAAGCAGCCAGTAATAAACTTTTGGATAATTTGAAGTACAATGTTGAAGTGGCCGAAAAAGTTGCTAATGACGCTCAGCG
CTTGCCAATATTGGAGGCGACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCT
Protein sequenceShow/hide protein sequence
IYSCNFHVQDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA