CuGenDBv2

Gene ID	MS017068
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	scaffold197:1144073..1144219
RNA-Seq Expression	MS017068
Synteny	MS017068
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0048038 - quinone binding (molecular function) GO:0050136 - NADH dehydrogenase (quinone) activity (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR001135 - NADH-quinone oxidoreductase, subunit D IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H IPR029014 - [NiFe]-hydrogenase, large subunit

Homology

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GenBank top hits

e value

%identity

Alignment

AWH09201.1 NADH dehydrogenase 49 kDa subunit [Asclepias schaffneri]

1.5e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGPF+NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

QWK49745.1 NADH-plastoquinone oxidoreductase subunit 7 [Ulmus lanceifolia]

1.1e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQVLEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

YP_009108815.1 NADH dehydrogenase 49 kDa subunit [Oncinotis tenuiloba]

1.5e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWE+ WQK GDSLARYL+R+GEMT+SIKIIQQVLEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

YP_009947871.1 NADH-plastoquinone oxidoreductase subunit 7 [Cerbera manghas]

1.1e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQVLEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

YP_010122689.1 NADH-plastoquinone oxidoreductase 49 kDa subunit [Acer circinatum]

1.5e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        DKFDWEV WQK GDSLARYL+R+GEMT+S+KIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

TrEMBL top hits

e value

%identity

Alignment

A0A0S0ZHW1 NdhH (Fragment)

1.6e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

A0A2H4NVT5 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

9.4e-16

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEVPWQK GDSLARYL+R+ EMT+SIKIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

A0A2H4NWD8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

9.4e-16

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEVPWQK GDSLARYL+R+ EMT+SIKIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

A0A2S1P286 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.6e-15

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

A0A6H0ESV9 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

9.4e-16

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+RLGEMT+SIKIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

SwissProt top hits

e value

%identity

Alignment

A1XG11 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.3e-17

81.63

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLE
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE

Q09MC0 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.7e-18

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+S+KIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

Q09WW2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

4.3e-18

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.7e-17

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI
        D+FDWEV WQK GDSLARYL+RL EMT+S+KIIQQ LEGIPGGP++NLEI
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

Q6EVZ4 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.3e-17

81.63

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE
        D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLE
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

1.7e-17

75.51

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Query:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE
        D+F+WE+ WQK GDSLARYL+RL EMT+SIKIIQQ LEG+PGGP++NLE
Subjt:  DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE

Sequences

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CDS sequence

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GACAAATTTGATTGGGAAGTTCCGTGGCAAAAAGGAGATTCATTAGCTCGTTATTTAATCAGACTTGGTGAGATGACGAAATCTATAAAAATTATTCAACAAGTTTTGGA
AGGAATTCCAGGAGGACCCTTTAAGAATTTAGAAATA

mRNA sequence

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GACAAATTTGATTGGGAAGTTCCGTGGCAAAAAGGAGATTCATTAGCTCGTTATTTAATCAGACTTGGTGAGATGACGAAATCTATAAAAATTATTCAACAAGTTTTGGA
AGGAATTCCAGGAGGACCCTTTAAGAATTTAGAAATA

Protein sequence

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DKFDWEVPWQKGDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

MS017068 (gene) of Bitter gourd (TR) v1 genome