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MS017079 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017079
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionH/ACA ribonucleoprotein complex subunit
Genome locationscaffold197:1291088..1291883
RNA-Seq ExpressionMS017079
SyntenyMS017079
Gene Ontology termsGO:0000454 - snoRNA guided rRNA pseudouridine synthesis (biological process)
GO:0030433 - ubiquitin-dependent ERAD pathway (biological process)
GO:0030968 - endoplasmic reticulum unfolded protein response (biological process)
GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex (cellular component)
GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component)
GO:0031429 - box H/ACA snoRNP complex (cellular component)
GO:0004252 - serine-type endopeptidase activity (molecular function)
GO:0034513 - box H/ACA snoRNA binding (molecular function)
GO:0051787 - misfolded protein binding (molecular function)
GO:1990381 - ubiquitin-specific protease binding (molecular function)
InterPro domainsIPR007504 - H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR038664 - H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595505.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]4.5e-6597.2Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP

Query:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        INESYFSIKMMEGIVATSY SGDKFYIDPAKLLPLARFLPQPK
Subjt:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

KAG7027491.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-6597.2Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP

Query:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        INESYFSIKMMEGIVATSY SGDKFYIDPAKLLPLARFLPQPK
Subjt:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

XP_022156221.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica charantia]9.8e-68100Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI

Query:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
Subjt:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

XP_022925015.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata]4.5e-6597.2Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP

Query:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        INESYFSIKMMEGIVATSY SGDKFYIDPAKLLPLARFLPQPK
Subjt:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

XP_023518062.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita pepo subsp. pepo]4.5e-6597.2Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP

Query:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        INESYFSIKMMEGIVATSY SGDKFYIDPAKLLPLARFLPQPK
Subjt:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

TrEMBL top hitse value%identityAlignment
A0A6J1DU94 H/ACA ribonucleoprotein complex subunit4.7e-68100Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI

Query:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
Subjt:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

A0A6J1EGP8 H/ACA ribonucleoprotein complex subunit2.2e-6597.2Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP

Query:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        INESYFSIKMMEGIVATSY SGDKFYIDPAKLLPLARFLPQPK
Subjt:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

A0A6J1GF54 H/ACA ribonucleoprotein complex subunit3.2e-6495.07Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
        MRPPRGGGGFRGGRDGGFGGRGGGR   GRGGGRFGGRGGGGFRDEGPP+EVVEVS+FLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI

Query:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        NESYFSIKMMEGIVATSY+SGDKFYIDPAKLLPLARFLPQPK
Subjt:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

A0A6J1HPE3 H/ACA ribonucleoprotein complex subunit2.2e-6597.2Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
        MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGP
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGP

Query:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        INESYFSIKMMEGIVATSY SGDKFYIDPAKLLPLARFLPQPK
Subjt:  INESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

A0A6J1IKQ7 H/ACA ribonucleoprotein complex subunit1.9e-6495.07Show/hide
Query:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
        MRPPRGGGGFRGGRDGGFGGRGGGR   GRGGGRFGGRGGGGFRDEGPPAEVVE+S+FLHACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI
Subjt:  MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPI

Query:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        NESYFSIKMMEGIVATSY+SGDKFYIDPAKLLPLARFLPQPK
Subjt:  NESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

SwissProt top hitse value%identityAlignment
A1CVY3 H/ACA ribonucleoprotein complex subunit gar18.7e-3565.35Show/hide
Query:  RGGGRGG---GGRGGGRFGGRGG-GGFRDE-GPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA
        RGGGRGG   G   GG FGGRGG GGF+ + GPPA+V+E+ TF+HACEG+ V    N KIP+FNAPIYL+NKT IGKVDE+ GPIN+ YF+IK  EGIVA
Subjt:  RGGGRGG---GGRGGGRFGGRGG-GGFRDE-GPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA

Query:  TSYTSGDKFYIDPAKLLPLARFLPQPK
        TS+  GDK YI   KLLPL +FLP+PK
Subjt:  TSYTSGDKFYIDPAKLLPLARFLPQPK

Q2HH48 H/ACA ribonucleoprotein complex subunit GAR18.7e-3565.6Show/hide
Query:  FGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS
        F G   GRGGGG GGGR GGRGG   RD GPPA V+E+  F+HACEG+ V   TN K+P FNAPIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS
Subjt:  FGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS

Query:  YTSGDKFYIDPAKLLPLARFLPQPK
        +  GDKFYI   KLLPL RFLP+PK
Subjt:  YTSGDKFYIDPAKLLPLARFLPQPK

Q5RJV1 H/ACA ribonucleoprotein complex subunit 12.1e-3363.7Show/hide
Query:  RGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFG-GRGGG------GFRDEGPPAEVVEVSTFLHACEGDAVTR-LTNE-KIPFFNAPIYLQNKTQIGKVDE
        RGGGG RGG  GGFGGRGGGRGG G+GGGR G GRGGG      G  D+GPP  VVEV  F+H CE D V + +T E ++P+FNAPIYL+NK QIGKVDE
Subjt:  RGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFG-GRGGG------GFRDEGPPAEVVEVSTFLHACEGDAVTR-LTNE-KIPFFNAPIYLQNKTQIGKVDE

Query:  IFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQP
        IFG + + YFSIK+ E + A+S+    KFYIDPAKLLPL RFLP+P
Subjt:  IFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQP

Q8VZT0 Putative H/ACA ribonucleoprotein complex subunit 1-like protein 11.6e-5283.11Show/hide
Query:  MRPP-RGGGGF--RGGRDGGFGGR-GGGRGGGGRGGGRFGGRGG--GGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVD
        MRPP RGGGGF  RGGRDGG GGR GGG G  G GGGRFGG GG  GGFRDEGPP+EVVEV+TF+HACEGDAVT+L+ EKIP FNAPIYL+NKTQIGKVD
Subjt:  MRPP-RGGGGF--RGGRDGGFGGR-GGGRGGGGRGGGRFGGRGG--GGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVD

Query:  EIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        EIFGPINES FSIKMMEGIVATSY+ GDKF+IDP KLLPLARFLPQPK
Subjt:  EIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

Q9FK53 H/ACA ribonucleoprotein complex subunit 1-like protein 24.4e-4777.08Show/hide
Query:  MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFG
        MRPPRGGG F  RGGRD   GGRG GR   GRG GRF    GGG  DEGPP+EVVEV+TFLHACEGDAV +L+N KIP FNAPIYLQNKTQIG+VDEIFG
Subjt:  MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFG

Query:  PINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        PINES FSIKM EGIVATSY+ GDKF+I P KLLPL+RFLPQPK
Subjt:  PINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

Arabidopsis top hitse value%identityAlignment
AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein1.1e-5383.11Show/hide
Query:  MRPP-RGGGGF--RGGRDGGFGGR-GGGRGGGGRGGGRFGGRGG--GGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVD
        MRPP RGGGGF  RGGRDGG GGR GGG G  G GGGRFGG GG  GGFRDEGPP+EVVEV+TF+HACEGDAVT+L+ EKIP FNAPIYL+NKTQIGKVD
Subjt:  MRPP-RGGGGF--RGGRDGGFGGR-GGGRGGGGRGGGRFGGRGG--GGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVD

Query:  EIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        EIFGPINES FSIKMMEGIVATSY+ GDKF+IDP KLLPLARFLPQPK
Subjt:  EIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

AT5G18180.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein3.2e-4877.08Show/hide
Query:  MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFG
        MRPPRGGG F  RGGRD   GGRG GR   GRG GRF    GGG  DEGPP+EVVEV+TFLHACEGDAV +L+N KIP FNAPIYLQNKTQIG+VDEIFG
Subjt:  MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFG

Query:  PINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK
        PINES FSIKM EGIVATSY+ GDKF+I P KLLPL+RFLPQPK
Subjt:  PINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGACGGTGGTTTCGGAGGTAGAGGAGGAGGCCGTGGCGGCGGCGGCCGGGGAGGTGGCCGCTTTGGTGG
TCGTGGCGGCGGAGGTTTCCGTGATGAGGGTCCTCCGGCTGAAGTCGTTGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGATGCCGTCACAAGGCTCACAAATGAAA
AGATTCCTTTCTTTAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTATTTCTCGATCAAAATGATG
GAAGGAATTGTCGCCACCTCGTATACTTCTGGGGATAAATTTTATATCGATCCGGCAAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAG
mRNA sequenceShow/hide mRNA sequence
ATGCGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGACGGTGGTTTCGGAGGTAGAGGAGGAGGCCGTGGCGGCGGCGGCCGGGGAGGTGGCCGCTTTGGTGG
TCGTGGCGGCGGAGGTTTCCGTGATGAGGGTCCTCCGGCTGAAGTCGTTGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGATGCCGTCACAAGGCTCACAAATGAAA
AGATTCCTTTCTTTAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTATTTCTCGATCAAAATGATG
GAAGGAATTGTCGCCACCTCGTATACTTCTGGGGATAAATTTTATATCGATCCGGCAAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAG
Protein sequenceShow/hide protein sequence
MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMM
EGIVATSYTSGDKFYIDPAKLLPLARFLPQPK