; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017085 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017085
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold197:1321911..1322102
RNA-Seq ExpressionMS017085
SyntenyMS017085
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7812642.1 reverse transcriptase [Senna tora]3.3e-0741.27Show/hide
Query:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        +WK NV PKI+ FI R   N +P+  N +++ ++V P Y  C++ EE+T H L  C +A Q+W
Subjt:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

KAF7824053.1 hypothetical protein G2W53_022197 [Senna tora]1.6e-0643.75Show/hide
Query:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        RIWKL V PKIR F  R  HN +PT LN  ++G+ +      CR   E T H  + C  AQ +W
Subjt:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

KAF7825130.1 putative RNA-directed DNA polymerase [Senna tora]1.1e-0537.5Show/hide
Query:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        +IWK N+ PKIR F+ R     +PT LN   +G+ ++     C ++EE T HAL+ C     +W
Subjt:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

XP_023918548.1 uncharacterized protein LOC112030098 [Quercus suber]4.8e-0643.55Show/hide
Query:  WKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        W+LN+ PK++ F  +   N +P+MLN  ++GLN S F   C  + ES  HALL C  A+Q W
Subjt:  WKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

XP_030963521.1 uncharacterized protein LOC115984637 [Quercus lobata]1.6e-0640.62Show/hide
Query:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        ++W LN+  K+R F  R     IP+MLN S +G+ V P Y  C  + EST HA++ C  A+++W
Subjt:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

TrEMBL top hitse value%identityAlignment
A0A2N9HRC9 Uncharacterized protein2.3e-0643.75Show/hide
Query:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        R+WKLN+  KI+ FI R  H+ +PT  N  ++ +  +PF   C  +EESTTHAL  C  A   W
Subjt:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

A0A445C0H0 RNase H domain-containing protein1.2e-0542.86Show/hide
Query:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        IWKL V  KIRTF+ R +HN +P   N  +K ++ +P    C  + EST HALL C   + +W
Subjt:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

A0A6J1DX30 uncharacterized protein LOC1110248741.5e-0546.03Show/hide
Query:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        IWKL V  KI+ FI R AH  IPT  N   +G+   P    C  + ES  HA   C RA+QIW
Subjt:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

A0A7N2LAI0 zf-RVT domain-containing protein5.2e-0644.44Show/hide
Query:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        IW LNV PKIRTFI R   N +PT  N  ++ + V P    C+ + E+TTH L  C  A+ +W
Subjt:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

A0A803Q9W0 Uncharacterized protein2.6e-0536.51Show/hide
Query:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        IWK    PK+R FI R  + ++P  +N   +G++V+P    C  +EE+  H+L  C  A+ IW
Subjt:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.3e-0430.16Show/hide
Query:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        IWKL+V PKI+ F+ R     + T      + ++  P    C  +EE+  H +  C   Q +W
Subjt:  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW

AT3G25270.1 Ribonuclease H-like superfamily protein9.6e-0529.69Show/hide
Query:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
        +IWKL   PKI+ F+ +     + T  N  ++ +   P    C  ++E++ H    C  AQQ+W
Subjt:  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAATATGGAAACTAAACGTTGTGCCAAAAATTCGAACATTCATACTGAGATTTGCGCATAATTTCATTCCAACGATGTTAAATTCGAGCCAGAAAGGTTTAAATGTCTC
ACCTTTCTATCTATGTTGTCGTTCTCAGGAAGAATCTACTACTCATGCTCTATTGGCTTGTCTTCGAGCACAGCAAATCTGG
mRNA sequenceShow/hide mRNA sequence
AGAATATGGAAACTAAACGTTGTGCCAAAAATTCGAACATTCATACTGAGATTTGCGCATAATTTCATTCCAACGATGTTAAATTCGAGCCAGAAAGGTTTAAATGTCTC
ACCTTTCTATCTATGTTGTCGTTCTCAGGAAGAATCTACTACTCATGCTCTATTGGCTTGTCTTCGAGCACAGCAAATCTGG
Protein sequenceShow/hide protein sequence
RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW