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MS017087 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017087
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVID27-like protein
Genome locationscaffold197:1328566..1329084
RNA-Seq ExpressionMS017087
SyntenyMS017087
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060117.1 B3 domain-containing protein [Cucumis melo var. makuwa]2.9e-1337.76Show/hide
Query:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY
        F  N P E+ K ++       + P ++MEK+L++ DV+E RNRL IP +K +  FL ++EE++++      VE+IEPD  TVS +TL +      +  +Y
Subjt:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY

Query:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI
        VL  +W+ +V RN   LK G  +++W F  G G G  RLCF +
Subjt:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI

TYK08431.1 B3 domain-containing protein [Cucumis melo var. makuwa]2.9e-1337.76Show/hide
Query:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY
        F  N P E+ K ++       + P ++MEK+L++ DV+E RNRL IP +K +  FL ++EE++++      VE+IEPD  TVS +TL +      +  +Y
Subjt:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY

Query:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI
        VL  +W+ +V RN   LK G  +++W F  G G G  RLCF +
Subjt:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI

XP_008441972.1 PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis melo]2.9e-1337.76Show/hide
Query:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY
        F  N P E+ K ++       + P ++MEK+L++ DV+E RNRL IP +K +  FL ++EE++++      VE+IEPD  TVS +TL +      +  +Y
Subjt:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY

Query:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI
        VL  +W+ +V RN   LK G  +++W F  G G G  RLCF +
Subjt:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI

XP_022156187.1 VID27-like protein [Momordica charantia]1.8e-9298.84Show/hide
Query:  ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPS
        ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPS
Subjt:  ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPS

Query:  YVLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAIEVFEAGKGGDGEFVKELTQKWWGQNIFTP
        YVLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGD GLRLCFAIEVFE+GKGGDGEFVKELTQKWWGQNIFTP
Subjt:  YVLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAIEVFEAGKGGDGEFVKELTQKWWGQNIFTP

XP_022156209.1 B3 domain-containing protein At1g05920-like [Momordica charantia]4.4e-1442.54Show/hide
Query:  PRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQVVARNSDALKRGRRV
        P  +M KKL ++DVDE  NRL IP +K++E F+ L+EE++++  + M VE+IEPDS +VS +TL +      + P+YV+  +W  +V RN   LK G  V
Subjt:  PRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQVVARNSDALKRGRRV

Query:  RVWYFHDGDGDGG-----LRLCFAIEVFEAGKGG
         +W F  G G GG      RLCF + V E  +GG
Subjt:  RVWYFHDGDGDGG-----LRLCFAIEVFEAGKGG

TrEMBL top hitse value%identityAlignment
A0A5A7SSE3 B3 domain-containing protein1.4e-1337.76Show/hide
Query:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY
        F  N P E+ K ++       + P ++MEK+L++ DV+E RNRL IP +K +  FL ++EE++++      VE+IEPD  TVS +TL +      +  +Y
Subjt:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY

Query:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI
        VL  +W+ +V RN   LK G  +++W F  G G G  RLCF +
Subjt:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI

A0A5A7UZP8 B3 domain-containing protein1.4e-1337.76Show/hide
Query:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY
        F  N P E+ K ++       + P ++MEK+L++ DV+E RNRL IP +K +  FL ++EE++++      VE+IEPD  TVS +TL +      +  +Y
Subjt:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY

Query:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI
        VL  +W+ +V RN   LK G  +++W F  G G G  RLCF +
Subjt:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI

A0A5D3C998 B3 domain-containing protein1.4e-1337.76Show/hide
Query:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY
        F  N P E+ K ++       + P ++MEK+L++ DV+E RNRL IP +K +  FL ++EE++++      VE+IEPD  TVS +TL +      +  +Y
Subjt:  FPPNFPLEFTKRLV---DPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSY

Query:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI
        VL  +W+ +V RN   LK G  +++W F  G G G  RLCF +
Subjt:  VLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAI

A0A6J1DRC9 VID27-like protein8.8e-9398.84Show/hide
Query:  ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPS
        ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPS
Subjt:  ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPS

Query:  YVLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAIEVFEAGKGGDGEFVKELTQKWWGQNIFTP
        YVLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGD GLRLCFAIEVFE+GKGGDGEFVKELTQKWWGQNIFTP
Subjt:  YVLTGQWSQVVARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAIEVFEAGKGGDGEFVKELTQKWWGQNIFTP

A0A6J1DSR8 B3 domain-containing protein At1g05920-like2.2e-1442.54Show/hide
Query:  PRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQVVARNSDALKRGRRV
        P  +M KKL ++DVDE  NRL IP +K++E F+ L+EE++++  + M VE+IEPDS +VS +TL +      + P+YV+  +W  +V RN   LK G  V
Subjt:  PRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQVVARNSDALKRGRRV

Query:  RVWYFHDGDGDGG-----LRLCFAIEVFEAGKGG
         +W F  G G GG      RLCF + V E  +GG
Subjt:  RVWYFHDGDGDGG-----LRLCFAIEVFEAGKGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCTCTCACAATTTTCCTCCGAACTTCCCCCTGGAATTCACGAAGCGACTCGTAGATCCGCTATCGATCCGTCCTCGAATCTTGATGGAGAAGAAACTGCGCGAATCCGA
CGTCGACGAGAATCGCAACCGGTTGTCGATTCCGGCGAAGAAGGTGAAGGAGGCGTTCTTGCTGCTGGATGAGGAGGATCGGATGAGCGCCGGCGAGGACATGGAGGTGG
AGGTGATCGAGCCGGACAGCGGAACGGTCAGCGCCGTGACTCTGCGGAGGCGGCGGATCGGAGAGAATCAGCCGCCGTCGTACGTGCTGACCGGGCAGTGGAGCCAGGTG
GTGGCGCGTAACAGTGACGCGCTAAAGAGGGGAAGAAGAGTTAGGGTTTGGTATTTTCACGACGGCGACGGCGACGGCGGCTTACGGCTCTGTTTTGCGATTGAAGTTTT
TGAAGCAGGGAAAGGGGGAGATGGTGAATTTGTGAAGGAACTGACTCAGAAATGGTGGGGACAAAATATCTTTACTCCA
mRNA sequenceShow/hide mRNA sequence
ATCTCTCACAATTTTCCTCCGAACTTCCCCCTGGAATTCACGAAGCGACTCGTAGATCCGCTATCGATCCGTCCTCGAATCTTGATGGAGAAGAAACTGCGCGAATCCGA
CGTCGACGAGAATCGCAACCGGTTGTCGATTCCGGCGAAGAAGGTGAAGGAGGCGTTCTTGCTGCTGGATGAGGAGGATCGGATGAGCGCCGGCGAGGACATGGAGGTGG
AGGTGATCGAGCCGGACAGCGGAACGGTCAGCGCCGTGACTCTGCGGAGGCGGCGGATCGGAGAGAATCAGCCGCCGTCGTACGTGCTGACCGGGCAGTGGAGCCAGGTG
GTGGCGCGTAACAGTGACGCGCTAAAGAGGGGAAGAAGAGTTAGGGTTTGGTATTTTCACGACGGCGACGGCGACGGCGGCTTACGGCTCTGTTTTGCGATTGAAGTTTT
TGAAGCAGGGAAAGGGGGAGATGGTGAATTTGTGAAGGAACTGACTCAGAAATGGTGGGGACAAAATATCTTTACTCCA
Protein sequenceShow/hide protein sequence
ISHNFPPNFPLEFTKRLVDPLSIRPRILMEKKLRESDVDENRNRLSIPAKKVKEAFLLLDEEDRMSAGEDMEVEVIEPDSGTVSAVTLRRRRIGENQPPSYVLTGQWSQV
VARNSDALKRGRRVRVWYFHDGDGDGGLRLCFAIEVFEAGKGGDGEFVKELTQKWWGQNIFTP