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MS017091 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017091
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L13, putative
Genome locationscaffold197:1348664..1348765
RNA-Seq ExpressionMS017091
SyntenyMS017091
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR036899 - Ribosomal protein L13 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8682304.1 putative choline kinase 1 [Hibiscus syriacus]3.7e-0580Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        Y+G+LKER+LKDQ+AK PTEVICKA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
MQM23610.1 hypothetical protein [Colocasia esculenta]4.8e-0588.57Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
XP_002509553.1 uncharacterized protein LOC8271774 [Ricinus communis]4.8e-0588.57Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
XP_015570542.1 uncharacterized protein LOC8269842 isoform X1 [Ricinus communis]4.8e-0588.57Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
XP_039024481.1 50S ribosomal protein L13-like [Hibiscus syriacus]3.7e-0580Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        Y+G+LKER+LKDQ+AK PTEVICKA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
TrEMBL top hitse value%identityAlignment
A0A6A2YSB9 Putative choline kinase 11.8e-0580Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        Y+G+LKER+LKDQ+AK PTEVICKA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
A0A6J1BUX0 uncharacterized protein LOC1110059592.3e-0588.57Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
B9RBL9 50S ribosomal protein L13, putative2.3e-0588.57Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
B9RFL2 50S ribosomal protein L13, putative2.3e-0588.57Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
R7W3M6 Uncharacterized protein4.0e-0571.43Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        Y+G+LKER LKD +AK PT+VICK ++CMLPRNKL
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01790.1 Ribosomal protein L13 family protein3.5e-0671.43Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        Y+G+LKERSLKDQ+AK PTEVI KA+  MLP N L
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
AT3G01790.2 Ribosomal protein L13 family protein3.5e-0671.43Show/hide
Query:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL
        Y+G+LKERSLKDQ+AK PTEVI KA+  MLP N L
Subjt:  YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGTAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG
mRNA sequenceShow/hide mRNA sequence
TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGTAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG
Protein sequenceShow/hide protein sequence
YVGNLKERSLKDQLAKPTEVICKALLCMLPRNKL