CuGenDBv2

Gene ID	MS017153
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DEAD-box ATP-dependent RNA helicase 18
Genome location	scaffold33:98029..98169
RNA-Seq Expression	MS017153
Synteny	MS017153
Gene Ontology terms	GO:0000070 - mitotic sister chromatid segregation (biological process) GO:1902440 - protein localization to mitotic spindle pole body (biological process) GO:0005730 - nucleolus (cellular component) GO:0005815 - microtubule organizing center (cellular component) GO:0072686 - mitotic spindle (cellular component) GO:1990811 - MWP complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KGN50318.2 hypothetical protein Csa_005855 [Cucumis sativus]

4.4e-09

72.34

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTL NFK+ LLVGGA+V+VDMK+I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

XP_004148172.1 DEAD-box ATP-dependent RNA helicase 18 [Cucumis sativus]

4.4e-09

72.34

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTL NFK+ LLVGGA+V+VDMK+I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

XP_008454834.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 18 [Cucumis melo]

5.8e-09

72.34

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTL NFK+ LLVGGA+V+VDMK+I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

XP_022146827.1 DEAD-box ATP-dependent RNA helicase 18 [Momordica charantia]

1.8e-10

80.85

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        +NVAL FVSTL NFKS LLVGGAEV+ DMK I+DE ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

XP_038891300.1 DEAD-box ATP-dependent RNA helicase 18 [Benincasa hispida]

4.4e-09

74.47

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTLLNFK+ LLVGGA+V+VDMK I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSG4 Uncharacterized protein

2.2e-09

72.34

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTL NFK+ LLVGGA+V+VDMK+I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

A0A1S3BZH6 DEAD-box ATP-dependent RNA helicase 18

2.8e-09

72.34

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTL NFK+ LLVGGA+V+VDMK+I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

A0A5D3D6C0 DEAD-box ATP-dependent RNA helicase 18

2.8e-09

72.34

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        + VA  FVSTL NFK+ LLVGGA+V+VDMK+I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

A0A6J1D0N8 DEAD-box ATP-dependent RNA helicase 18

8.7e-11

80.85

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        +NVAL FVSTL NFKS LLVGGAEV+ DMK I+DE ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

A0A6P3ZPY5 DEAD-box ATP-dependent RNA helicase 18

3.7e-09

74.47

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        +NVA  FVSTL NFKS LLVGGAEV+ D+K I++E ANLLIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

SwissProt top hits

e value

%identity

Alignment

Q761Z9 DEAD-box ATP-dependent RNA helicase 18

3.7e-06

46.81

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        +NVA  F +TL    S LLVGG +++ ++K +++E AN+L+GTPG+L
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

Q8GXD6 DEAD-box ATP-dependent RNA helicase 49

7.9e-09

68.89

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Query:  VALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        VA  FVSTL N  S LLVGG EVE DM  +++E ANLLIGTPGRL
Subjt:  VALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

Q9FLB0 DEAD-box ATP-dependent RNA helicase 18

2.4e-10

68.09

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        +NVA  FVSTL N  S LLVGG EV+ DMKII++E  N+LIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

Arabidopsis top hits

e value

%identity

Alignment

AT1G71370.1 DEA(D/H)-box RNA helicase family protein

5.6e-10

68.89

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Query:  VALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        VA  FVSTL N  S LLVGG EVE DM  +++E ANLLIGTPGRL
Subjt:  VALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.7e-11

68.09

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Query:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL
        +NVA  FVSTL N  S LLVGG EV+ DMKII++E  N+LIGTPGRL
Subjt:  FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

Sequences

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CDS sequence

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TTCAATGTTGCTCTTTCTTTTGTTTCTACACTATTAAATTTCAAATCAACGCTTCTCGTCGGAGGAGCCGAAGTAGAAGTAGACATGAAGATAATTAAAGACGAAGATGC
AAATTTGTTGATTGGGACTCCTGGAAGGCTA

mRNA sequence

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TTCAATGTTGCTCTTTCTTTTGTTTCTACACTATTAAATTTCAAATCAACGCTTCTCGTCGGAGGAGCCGAAGTAGAAGTAGACATGAAGATAATTAAAGACGAAGATGC
AAATTTGTTGATTGGGACTCCTGGAAGGCTA

Protein sequence

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FNVALSFVSTLLNFKSTLLVGGAEVEVDMKIIKDEDANLLIGTPGRL

MS017153 (gene) of Bitter gourd (TR) v1 genome