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MS017154 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017154
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 18
Genome locationscaffold33:99403..99671
RNA-Seq ExpressionMS017154
SyntenyMS017154
Gene Ontology termsGO:0000070 - mitotic sister chromatid segregation (biological process)
GO:1902440 - protein localization to mitotic spindle pole body (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005815 - microtubule organizing center (cellular component)
GO:0072686 - mitotic spindle (cellular component)
GO:1990811 - MWP complex (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599970.1 DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. sororia]4.9e-1763.64Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASFVSLSSGVLLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

THF97383.1 hypothetical protein TEA_023740 [Camellia sinensis var. sinensis]1.3e-1761.36Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++  WL  LK FSLIPLHGK KQ         R KALASF SLSSG+LLCTD  AARGL+I GV+ +IQ     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

XP_022146827.1 DEAD-box ATP-dependent RNA helicase 18 [Momordica charantia]3.7e-1763.64Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASFVSLSSGVLLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

XP_022764967.1 DEAD-box ATP-dependent RNA helicase 18 isoform X2 [Durio zibethinus]4.9e-1761.36Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASF SLSSG+LLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

XP_028118163.1 DEAD-box ATP-dependent RNA helicase 18 isoform X1 [Camellia sinensis]1.3e-1761.36Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++  WL  LK FSLIPLHGK KQ         R KALASF SLSSG+LLCTD  AARGL+I GV+ +IQ     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

TrEMBL top hitse value%identityAlignment
A0A4S4D658 Uncharacterized protein6.2e-1861.36Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++  WL  LK FSLIPLHGK KQ         R KALASF SLSSG+LLCTD  AARGL+I GV+ +IQ     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

A0A6J1D0N8 DEAD-box ATP-dependent RNA helicase 181.8e-1763.64Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASFVSLSSGVLLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

A0A6J1FPL3 DEAD-box ATP-dependent RNA helicase 182.4e-1763.64Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASFVSLSSGVLLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

A0A6J1JYJ7 DEAD-box ATP-dependent RNA helicase 182.4e-1763.64Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASFVSLSSGVLLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

A0A6P6AJI3 DEAD-box ATP-dependent RNA helicase 18 isoform X12.4e-1761.36Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF+TCAC DYWG++   LT LK FSLIPLHGK KQ         R KALASF SLSSG+LLCTD  AARGL+I GV+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

SwissProt top hitse value%identityAlignment
A6R918 ATP-dependent rRNA helicase SPB46.9e-0644.44Show/hide
Query:  YFITCACADYW-GILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFV-SLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF TCA  DY+  ILP  L     F+ IPLHGK           VR K    FV S++S +LL TD  AARGL+I  V+ +IQ+    DP
Subjt:  YFITCACADYW-GILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFV-SLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

Q761Z9 DEAD-box ATP-dependent RNA helicase 185.2e-1452.27Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        YF TCAC DYW I+   L  LK   +IP HGK KQ         R KALASF +LSSG+L+CTD  AARGL+I  V+ I+Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

Q8GXD6 DEAD-box ATP-dependent RNA helicase 491.3e-1246.59Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        +F+TCAC DYWG++   +  LK  S    HGK  Q         R  ALASF   SSGVLLCTD  AARGL+I G+++++Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

Q9FLB0 DEAD-box ATP-dependent RNA helicase 181.1e-1448.86Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        +F+TCA  DYWG++   +  LK  SLIP+HG  KQ       + R KALASF   SSG LLCTD  AARGL+I G+++++Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

Q9FVV4 DEAD-box ATP-dependent RNA helicase 552.2e-1250Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAM
        +F+TCAC DYWG++   +  LK  S  P HGK  Q         R  ALASF   SSGVLLCTD  AARGL+I G+ +I  LA+
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAM

Arabidopsis top hitse value%identityAlignment
AT1G71280.1 DEA(D/H)-box RNA helicase family protein1.6e-1350Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAM
        +F+TCAC DYWG++   +  LK  S  P HGK  Q         R  ALASF   SSGVLLCTD  AARGL+I G+ +I  LA+
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAM

AT1G71370.1 DEA(D/H)-box RNA helicase family protein9.2e-1446.59Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        +F+TCAC DYWG++   +  LK  S    HGK  Q         R  ALASF   SSGVLLCTD  AARGL+I G+++++Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP

AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein7.5e-1648.86Show/hide
Query:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP
        +F+TCA  DYWG++   +  LK  SLIP+HG  KQ       + R KALASF   SSG LLCTD  AARGL+I G+++++Q     DP
Subjt:  YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACTTCATAACTTGTGCTTGTGCTGACTACTGGGGAATTTTGCCATTGTGGCTTACCGGTTTAAAATGGTTTTCCTTAATCCCTCTACACGGAAAGACAAAACAGGTATT
CATTACTATGAGTTTTGATGTCAGGACTAAAGCACTAGCCTCATTTGTGTCCCTCTCAAGTGGTGTTCTTCTATGCACAGATCGATGTGCAGCCCGTGGACTCAACATTC
TTGGCGTCAATCATATAATTCAGTTGGCCATGGATGTTGATCCA
mRNA sequenceShow/hide mRNA sequence
TACTTCATAACTTGTGCTTGTGCTGACTACTGGGGAATTTTGCCATTGTGGCTTACCGGTTTAAAATGGTTTTCCTTAATCCCTCTACACGGAAAGACAAAACAGGTATT
CATTACTATGAGTTTTGATGTCAGGACTAAAGCACTAGCCTCATTTGTGTCCCTCTCAAGTGGTGTTCTTCTATGCACAGATCGATGTGCAGCCCGTGGACTCAACATTC
TTGGCGTCAATCATATAATTCAGTTGGCCATGGATGTTGATCCA
Protein sequenceShow/hide protein sequence
YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP