CuGenDBv2

Gene ID	MS017162
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	sister chromatid cohesion 1 protein 1-like
Genome location	scaffold33:189326..190114
RNA-Seq Expression	MS017162
Synteny	MS017162
Gene Ontology terms	GO:0000038 - very long-chain fatty acid metabolic process (biological process) GO:0001676 - long-chain fatty acid metabolic process (biological process) GO:0007062 - sister chromatid cohesion (biological process) GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase (biological process) GO:0045132 - meiotic chromosome segregation (biological process) GO:0055088 - lipid homeostasis (biological process) GO:0070192 - chromosome organization involved in meiotic cell cycle (biological process) GO:0005634 - nucleus (cellular component) GO:0005777 - peroxisome (cellular component) GO:0008278 - cohesin complex (cellular component) GO:0005504 - fatty acid binding (molecular function) GO:0016401 - palmitoyl-CoA oxidase activity (molecular function) GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domains	IPR039781 - Rad21/Rec8-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599976.1 putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-58

77.11

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNSETN  RSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
         SSGGLE V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

XP_022146768.1 LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica charantia]

3.5e-85

99.39

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

XP_022146858.1 sister chromatid cohesion 1 protein 1-like [Momordica charantia]

3.5e-85

99.39

Show/hide

Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

XP_022996758.1 sister chromatid cohesion 1 protein 1 [Cucurbita maxima]

2.1e-58

77.11

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNSETN VRSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
        Q SGGL+ V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

XP_023543038.1 sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]

2.8e-58

77.11

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNSETN  RSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
         SSGGLE V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CZF6 LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like

1.7e-85

99.39

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

A0A6J1CZP0 sister chromatid cohesion 1 protein 1-like

1.7e-85

99.39

Show/hide

Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

A0A6J1FMB0 sister chromatid cohesion 1 protein 1

1.4e-58

77.11

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNSETN  RSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
         SSGGLE V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

A0A6J1JEF3 sister chromatid cohesion 1 protein 1-like isoform X2

8.8e-58

75.76

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Query:  FEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQ
        +E  +SGVGSQSFGASIEKLRT+P+N DI  +I+ EELR +FM+N+MG+AERNQVVTP NSG GVRSV SSASEHGVF YN ETN VRSNKK PY SSRQ
Subjt:  FEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQ

Query:  SSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
        SSGGLE VAEE+ W  HHSD NFKLA LSENDPDLLVETAPTQ   TQPAIKN   DKIT+SIR+
Subjt:  SSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

A0A6J1KBX6 sister chromatid cohesion 1 protein 1

1.0e-58

77.11

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Query:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR
        PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNSETN VRSNKK PYSSSR
Subjt:  PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
        Q SGGL+ V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

SwissProt top hits

e value

%identity

Alignment

Q9S7T7 Sister chromatid cohesion 1 protein 1

3.9e-10

36.2

Show/hide

Query:  SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSS
        S   SQ+  +  E LRT        V+ +    R++        A+ N  VTP  SG+ VRS+PS+ S  G  S N+     +S   N+K P SS R+  
Subjt:  SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSS

Query:  GGLESVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR
         GLE VAEE  W   H +  F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Subjt:  GGLESVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR

Arabidopsis top hits

e value

%identity

Alignment

AT5G05490.1 Rad21/Rec8-like family protein

2.7e-11

36.2

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Query:  SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSS
        S   SQ+  +  E LRT        V+ +    R++        A+ N  VTP  SG+ VRS+PS+ S  G  S N+     +S   N+K P SS R+  
Subjt:  SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSS

Query:  GGLESVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR
         GLE VAEE  W   H +  F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Subjt:  GGLESVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR

AT5G05490.2 Rad21/Rec8-like family protein

2.7e-11

36.2

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Query:  SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSS
        S   SQ+  +  E LRT        V+ +    R++        A+ N  VTP  SG+ VRS+PS+ S  G  S N+     +S   N+K P SS R+  
Subjt:  SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSS

Query:  GGLESVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR
         GLE VAEE  W   H +  F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Subjt:  GGLESVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR

Sequences

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CDS sequence

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ATGAAGCCTTTTGAAGGTTACCACAGTGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGACATCGT
TCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGAAATGGAGTCAGATCAGTTCCAAGCT
CAGCATCTGAACATGGTGTCTTCTCATATAATTCAGAGACCAATTTTGTACGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCT
GTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGACTTATTAGTAGAAACAGCACCCACACAAAC
TCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG

mRNA sequence

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Protein sequence

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MKPFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLES
VAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

MS017162 (gene) of Bitter gourd (TR) v1 genome