CuGenDBv2

Gene ID	MS017169
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	sister chromatid cohesion 1 protein 1-like
Genome location	scaffold33:245213..246001
RNA-Seq Expression	MS017169
Synteny	MS017169
Gene Ontology terms	GO:0000038 - very long-chain fatty acid metabolic process (biological process) GO:0001676 - long-chain fatty acid metabolic process (biological process) GO:0007062 - sister chromatid cohesion (biological process) GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase (biological process) GO:0045132 - meiotic chromosome segregation (biological process) GO:0055088 - lipid homeostasis (biological process) GO:0070192 - chromosome organization involved in meiotic cell cycle (biological process) GO:0005634 - nucleus (cellular component) GO:0005777 - peroxisome (cellular component) GO:0008278 - cohesin complex (cellular component) GO:0005504 - fatty acid binding (molecular function) GO:0016401 - palmitoyl-CoA oxidase activity (molecular function) GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domains	IPR039781 - Rad21/Rec8-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599976.1 putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-58

76.51

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Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFE +H+GVGSQSFGASIEKLRT+P+N DIQ EI+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNS+TN  RSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
         SSGGLE V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

XP_022146768.1 LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica charantia]

6.6e-84

96.93

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Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFEGYH+GVGSQSFGASIEKLRTEPINGDIQV+I+PEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNS+TNFVRSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

XP_022146858.1 sister chromatid cohesion 1 protein 1-like [Momordica charantia]

6.6e-84

96.93

Show/hide

Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFEGYH+GVGSQSFGASIEKLRTEPINGDIQV+I+PEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNS+TNFVRSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

XP_022996758.1 sister chromatid cohesion 1 protein 1 [Cucurbita maxima]

2.8e-58

76.51

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Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFE +H+GVGSQSFGASIEKLRT+P+N DIQ EI+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNS+TN VRSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
        Q SGGL+ V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

XP_023543038.1 sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]

3.7e-58

76.51

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Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFE +H+GVGSQSFGASIEKLRT+P+N DIQ EI+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNS+TN  RSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
         SSGGLE V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CZF6 LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like

3.2e-84

96.93

Show/hide

Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFEGYH+GVGSQSFGASIEKLRTEPINGDIQV+I+PEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNS+TNFVRSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

A0A6J1CZP0 sister chromatid cohesion 1 protein 1-like

3.2e-84

96.93

Show/hide

Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFEGYH+GVGSQSFGASIEKLRTEPINGDIQV+I+PEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNS+TNFVRSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
        QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

A0A6J1FMB0 sister chromatid cohesion 1 protein 1

1.8e-58

76.51

Show/hide

Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFE +H+GVGSQSFGASIEKLRT+P+N DIQ EI+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNS+TN  RSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
         SSGGLE V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

A0A6J1JEF3 sister chromatid cohesion 1 protein 1-like isoform X2

1.5e-57

75.15

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Query:  FEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSRQ
        +E  ++GVGSQSFGASIEKLRT+P+N DI  EI+ EELR +FM+N+MG+AERNQVVTP NSG GVRSV SSASEHGVF YN +TN VRSNKK PY SSRQ
Subjt:  FEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSRQ

Query:  SSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
        SSGGLE VAEE+ W  HHSD NFKLA LSENDPDLLVETAPTQ   TQPAIKN   DKIT+SIR+
Subjt:  SSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

A0A6J1KBX6 sister chromatid cohesion 1 protein 1

1.4e-58

76.51

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Query:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR
        PFE +H+GVGSQSFGASIEKLRT+P+N DIQ EI+  ELR NFMDN+M LAERNQVVTP NSG G+R V SSASEHGVFSYNS+TN VRSNKK PYSSSR
Subjt:  PFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSR

Query:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL
        Q SGGL+ V EE+QW  HHSD NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Subjt:  QSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL

SwissProt top hits

e value

%identity

Alignment

Q9S7T7 Sister chromatid cohesion 1 protein 1

3.0e-10

37.11

Show/hide

Query:  SQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRS---NKKMPYSSSRQSSGGLE
        SQ+  +  E LRT        VE +    R++        A+ N  VTP  SG+ VRS+PS+ S  G  S N+     +S   N+K P SS R+   GLE
Subjt:  SQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRS---NKKMPYSSSRQSSGGLE

Query:  SVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR
         VAEE  W   H +  F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Subjt:  SVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR

Arabidopsis top hits

e value

%identity

Alignment

AT5G05490.1 Rad21/Rec8-like family protein

2.1e-11

37.11

Show/hide

Query:  SQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRS---NKKMPYSSSRQSSGGLE
        SQ+  +  E LRT        VE +    R++        A+ N  VTP  SG+ VRS+PS+ S  G  S N+     +S   N+K P SS R+   GLE
Subjt:  SQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRS---NKKMPYSSSRQSSGGLE

Query:  SVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR
         VAEE  W   H +  F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Subjt:  SVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR

AT5G05490.2 Rad21/Rec8-like family protein

2.1e-11

37.11

Show/hide

Query:  SQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRS---NKKMPYSSSRQSSGGLE
        SQ+  +  E LRT        VE +    R++        A+ N  VTP  SG+ VRS+PS+ S  G  S N+     +S   N+K P SS R+   GLE
Subjt:  SQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRS---NKKMPYSSSRQSSGGLE

Query:  SVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR
         VAEE  W   H +  F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Subjt:  SVAEEHQWHPHHSDTNFKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR

Sequences

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CDS sequence

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ATGAAGCCTTTTGAAGGTTACCACAACGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGAGATCAT
TCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGAAATGGAGTAAGATCAGTTCCAAGCT
CAGCATCTGAACATGGTGTTTTCTCATATAATTCAGATACCAATTTTGTACGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCT
GTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGACTTATTAGTAGAAACAGCACCCACACAAAC
TCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG

mRNA sequence

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Protein sequence

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MKPFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSRQSSGGLES
VAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

MS017169 (gene) of Bitter gourd (TR) v1 genome