; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017175 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017175
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold33:291813..292262
RNA-Seq ExpressionMS017175
SyntenyMS017175
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN50265.2 hypothetical protein Csa_005809 [Cucumis sativus]7.7e-5567.26Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPAAAA--
        M+TSQV PS+PWHFTE DDR+FQIRGR FFFV VLFAVILLVTFIFLYARWVCRFH+LT FSA +        PP QGL    I+ LPITL+KP AA   
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPAAAA--

Query:  --------TAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
                  EC ICLGVFE+G+KVK+LPPCRH +HSECVD+WLRS SSCPLCRVSL +D S NLE +
Subjt:  --------TAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

XP_016901617.1 PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo]7.7e-5570.24Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVP-------PP--QGLDPAAILCLPITLHK------
        M+TSQV PS+PWHFTE DDR+FQIRGR FFFV VLFAVILLVTFIFLYARWVCRFH+LT FSA++P       PP  QGL   AI  LPITL+K      
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVP-------PP--QGLDPAAILCLPITLHK------

Query:  --PAAAATA-ECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
          PAAA+ A EC ICLGVFE+G+KVK+LPPCRH +HSECVD+WLRS SSCPLCRVSL +D S NLE V
Subjt:  --PAAAATA-ECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

XP_022942690.1 RING-H2 finger protein ATL66 [Cucurbita moschata]2.1e-5268.29Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHK-----PA
        M+T Q  PS+ WHFTE DDRIFQIRGR FFF+ VLFAVILLVTFIFLYARWVCR+H LT FSA+V        PP QGLD A I C  ITL+K      A
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHK-----PA

Query:  AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLR-VDLSANLEQV
        AA  AECCICLGVFE+G+KVK+L  C H FHSECVDQWLR QSSCPLCR+SLR  D S+NL+ V
Subjt:  AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLR-VDLSANLEQV

XP_031741031.1 RING-H2 finger protein ATL66 [Cucumis sativus]3.4e-5567.86Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPAAAA--
        M+TSQV PS+PWHFTE DDR+FQIRGR FFFV VLFAVILLVTFIFLYARWVCRFH+LT FSA +        PP QGL    I+ LPITL+KP AA   
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPAAAA--

Query:  --------TAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
                  EC ICLGVFE+G+KVK+LPPCRH +HSECVD+WLRS SSCPLCRVSL +D S NLE V
Subjt:  --------TAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

XP_038892868.1 RING-H2 finger protein ATL66-like [Benincasa hispida]4.5e-5568.86Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHK--PA---
        M+TSQV PS+ WHFTE DDR+FQIRGR FFFV VLFA+ILLVTFIFLYARWVCRFH+LT F AAV        PP QGL+P AI CLPI+L+K  PA   
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHK--PA---

Query:  ----AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
             AA  EC ICLGVFE+G+KVK+LP CRH +HSECVD+WLRSQSSCPLCRVSL +D S NL+ V
Subjt:  ----AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

TrEMBL top hitse value%identityAlignment
A0A0A0KLZ2 RING-type E3 ubiquitin transferase1.7e-5567.86Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPAAAA--
        M+TSQV PS+PWHFTE DDR+FQIRGR FFFV VLFAVILLVTFIFLYARWVCRFH+LT FSA +        PP QGL    I+ LPITL+KP AA   
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPAAAA--

Query:  --------TAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
                  EC ICLGVFE+G+KVK+LPPCRH +HSECVD+WLRS SSCPLCRVSL +D S NLE V
Subjt:  --------TAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

A0A1S4E052 RING-type E3 ubiquitin transferase3.7e-5570.24Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVP-------PP--QGLDPAAILCLPITLHK------
        M+TSQV PS+PWHFTE DDR+FQIRGR FFFV VLFAVILLVTFIFLYARWVCRFH+LT FSA++P       PP  QGL   AI  LPITL+K      
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVP-------PP--QGLDPAAILCLPITLHK------

Query:  --PAAAATA-ECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
          PAAA+ A EC ICLGVFE+G+KVK+LPPCRH +HSECVD+WLRS SSCPLCRVSL +D S NLE V
Subjt:  --PAAAATA-ECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

A0A5A7T2R0 RING-type E3 ubiquitin transferase3.7e-5570.24Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVP-------PP--QGLDPAAILCLPITLHK------
        M+TSQV PS+PWHFTE DDR+FQIRGR FFFV VLFAVILLVTFIFLYARWVCRFH+LT FSA++P       PP  QGL   AI  LPITL+K      
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVP-------PP--QGLDPAAILCLPITLHK------

Query:  --PAAAATA-ECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV
          PAAA+ A EC ICLGVFE+G+KVK+LPPCRH +HSECVD+WLRS SSCPLCRVSL +D S NLE V
Subjt:  --PAAAATA-ECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV

A0A6J1FWS0 RING-type E3 ubiquitin transferase1.0e-5268.29Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHK-----PA
        M+T Q  PS+ WHFTE DDRIFQIRGR FFF+ VLFAVILLVTFIFLYARWVCR+H LT FSA+V        PP QGLD A I C  ITL+K      A
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHK-----PA

Query:  AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLR-VDLSANLEQV
        AA  AECCICLGVFE+G+KVK+L  C H FHSECVDQWLR QSSCPLCR+SLR  D S+NL+ V
Subjt:  AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLR-VDLSANLEQV

A0A6J1K4V5 RING-type E3 ubiquitin transferase1.1e-5166.27Show/hide
Query:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPA-----
        M+T Q  PS+ WHFTE DDRIFQIRGR  FF+ VLFAVILLVTFIFLYARWVCR+H L  FS AV        PP QGLD AAI C PITL+K A     
Subjt:  MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAV--------PPPQGLDPAAILCLPITLHKPA-----

Query:  -----AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLR-VDLSANLEQV
             AA  AECCICLGVFE+G+KVK+L  C H FHSECVDQWLR QSSCPLCR+SLR  D S NL+ V
Subjt:  -----AAATAECCICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLR-VDLSANLEQV

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL641.6e-1537.4Show/hide
Query:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQGLDPAAILCLPITLHK----PAAAATAECCICLGVFEEGDKVKVLPPCRHYF
        V+VLF  ++++     YARW+ R H           L   SA+ P  Q LD A +  +PI ++     P      EC +CL  FEE D+ ++LP C H F
Subjt:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQGLDPAAILCLPITLHK----PAAAATAECCICLGVFEEGDKVKVLPPCRHYF

Query:  HSECVDQWLRSQSSCPLCRVSLR
        H +C+D W RS+S+CPLCR  ++
Subjt:  HSECVDQWLRSQSSCPLCRVSLR

Q8L9T5 RING-H2 finger protein ATL28.1e-1537.01Show/hide
Query:  VVVLFAVILLVTFIFLYARWV------------CRFHRLT---------AFSAAVPPPQGLDPAAILCLPI-TLHKPAAAATAECCICLGVFEEGDKVKV
        +V+LF V++L+ F+ LYARW              R  R T           + +V   +GLDP  I  LP+ T          EC +CL  FEE +  +V
Subjt:  VVVLFAVILLVTFIFLYARWV------------CRFHRLT---------AFSAAVPPPQGLDPAAILCLPI-TLHKPAAAATAECCICLGVFEEGDKVKV

Query:  LPPCRHYFHSECVDQWLRSQSSCPLCR
        LP C+H FH +C+D W  S S+CPLCR
Subjt:  LPPCRHYFHSECVDQWLRSQSSCPLCR

Q9LZJ6 RING-H2 finger protein ATL51.6e-1537.01Show/hide
Query:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQG------LDPAAILCLPITLH--KPAAAATAECCICLGVFEEGDKVKVLPPC
        V++LF  ++L+     YARW+ R             L + +AA  P Q       LDP  +  +PI ++  K   +   EC +CL  FEE D+ +VLP C
Subjt:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQG------LDPAAILCLPITLH--KPAAAATAECCICLGVFEEGDKVKVLPPC

Query:  RHYFHSECVDQWLRSQSSCPLCRVSLR
         H FH +C+D W RS+SSCPLCR  ++
Subjt:  RHYFHSECVDQWLRSQSSCPLCRVSLR

Q9SLC4 RING-H2 finger protein ATL402.8e-1539.66Show/hide
Query:  FFFVVVLFAVILLVTFI-FLYARWVCRFHRLTAFS------AAVPPPQGLDPAAILCLP-ITLHKPAAAATAECCICLGVFEEGDKVKVLPPCRHYFHSE
        F    V F++I+++ F+ +LYA++V   HR +AF        + PP +GLD   I  LP   +      A  EC +CL + EE D  ++LP C+H FH  
Subjt:  FFFVVVLFAVILLVTFI-FLYARWVCRFHRLTAFS------AAVPPPQGLDPAAILCLP-ITLHKPAAAATAECCICLGVFEEGDKVKVLPPCRHYFHSE

Query:  CVDQWLRSQSSCPLCR
        CVD WL +QS+CP+CR
Subjt:  CVDQWLRSQSSCPLCR

Q9SRM0 RING-H2 finger protein ATL666.2e-3148.67Show/hide
Query:  QVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVPP------PQGLDPAAILCLPITLHKPAAA---ATAECC
        Q S  L WH  ++DDR FQI GR  FF + LF+V+L    + LY    C         A+ P         GLDPA I  LP+ L +   A      ECC
Subjt:  QVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVPP------PQGLDPAAILCLPITLHKPAAA---ATAECC

Query:  ICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSA
        ICLG FEEG+K+KVLPPC H +H ECVD+WL+++SSCPLCRVS+RVD S+
Subjt:  ICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSA

Arabidopsis top hitse value%identityAlignment
AT2G42350.1 RING/U-box superfamily protein2.0e-1639.66Show/hide
Query:  FFFVVVLFAVILLVTFI-FLYARWVCRFHRLTAFS------AAVPPPQGLDPAAILCLP-ITLHKPAAAATAECCICLGVFEEGDKVKVLPPCRHYFHSE
        F    V F++I+++ F+ +LYA++V   HR +AF        + PP +GLD   I  LP   +      A  EC +CL + EE D  ++LP C+H FH  
Subjt:  FFFVVVLFAVILLVTFI-FLYARWVCRFHRLTAFS------AAVPPPQGLDPAAILCLP-ITLHKPAAAATAECCICLGVFEEGDKVKVLPPCRHYFHSE

Query:  CVDQWLRSQSSCPLCR
        CVD WL +QS+CP+CR
Subjt:  CVDQWLRSQSSCPLCR

AT2G47560.1 RING/U-box superfamily protein1.2e-1637.4Show/hide
Query:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQGLDPAAILCLPITLHK----PAAAATAECCICLGVFEEGDKVKVLPPCRHYF
        V+VLF  ++++     YARW+ R H           L   SA+ P  Q LD A +  +PI ++     P      EC +CL  FEE D+ ++LP C H F
Subjt:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQGLDPAAILCLPITLHK----PAAAATAECCICLGVFEEGDKVKVLPPCRHYF

Query:  HSECVDQWLRSQSSCPLCRVSLR
        H +C+D W RS+S+CPLCR  ++
Subjt:  HSECVDQWLRSQSSCPLCRVSLR

AT3G11110.1 RING/U-box superfamily protein4.4e-3248.67Show/hide
Query:  QVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVPP------PQGLDPAAILCLPITLHKPAAA---ATAECC
        Q S  L WH  ++DDR FQI GR  FF + LF+V+L    + LY    C         A+ P         GLDPA I  LP+ L +   A      ECC
Subjt:  QVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVPP------PQGLDPAAILCLPITLHKPAAA---ATAECC

Query:  ICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSA
        ICLG FEEG+K+KVLPPC H +H ECVD+WL+++SSCPLCRVS+RVD S+
Subjt:  ICLGVFEEGDKVKVLPPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSA

AT3G16720.1 TOXICOS EN LEVADURA 25.7e-1637.01Show/hide
Query:  VVVLFAVILLVTFIFLYARWV------------CRFHRLT---------AFSAAVPPPQGLDPAAILCLPI-TLHKPAAAATAECCICLGVFEEGDKVKV
        +V+LF V++L+ F+ LYARW              R  R T           + +V   +GLDP  I  LP+ T          EC +CL  FEE +  +V
Subjt:  VVVLFAVILLVTFIFLYARWV------------CRFHRLT---------AFSAAVPPPQGLDPAAILCLPI-TLHKPAAAATAECCICLGVFEEGDKVKV

Query:  LPPCRHYFHSECVDQWLRSQSSCPLCR
        LP C+H FH +C+D W  S S+CPLCR
Subjt:  LPPCRHYFHSECVDQWLRSQSSCPLCR

AT3G62690.1 AtL51.2e-1637.01Show/hide
Query:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQG------LDPAAILCLPITLH--KPAAAATAECCICLGVFEEGDKVKVLPPC
        V++LF  ++L+     YARW+ R             L + +AA  P Q       LDP  +  +PI ++  K   +   EC +CL  FEE D+ +VLP C
Subjt:  VVVLFAVILLVTFIFLYARWVCRFH----------RLTAFSAAVPPPQG------LDPAAILCLPITLH--KPAAAATAECCICLGVFEEGDKVKVLPPC

Query:  RHYFHSECVDQWLRSQSSCPLCRVSLR
         H FH +C+D W RS+SSCPLCR  ++
Subjt:  RHYFHSECVDQWLRSQSSCPLCRVSLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACATCCCAAGTTTCCCCCTCGCTCCCCTGGCACTTCACAGAGTTCGACGACCGGATCTTCCAAATCCGCGGCCGGCCTTTCTTCTTCGTCGTCGTTCTGTTCGC
CGTAATCCTTCTCGTTACCTTTATTTTCCTTTACGCCCGATGGGTCTGCAGATTCCACCGCCTCACGGCGTTCTCCGCCGCCGTTCCGCCGCCGCAAGGGCTCGATCCGG
CCGCGATCCTCTGCCTTCCGATTACCCTGCACAAGCCGGCAGCGGCGGCGACGGCGGAGTGCTGTATTTGCTTGGGCGTGTTTGAGGAAGGGGACAAAGTTAAGGTTCTG
CCGCCGTGCCGCCATTATTTTCACTCCGAGTGCGTCGACCAGTGGCTCCGGTCACAGTCGAGCTGCCCGCTTTGCCGAGTCTCTCTACGTGTCGATCTCTCTGCCAATCT
TGAACAGGTC
mRNA sequenceShow/hide mRNA sequence
ATGTCGACATCCCAAGTTTCCCCCTCGCTCCCCTGGCACTTCACAGAGTTCGACGACCGGATCTTCCAAATCCGCGGCCGGCCTTTCTTCTTCGTCGTCGTTCTGTTCGC
CGTAATCCTTCTCGTTACCTTTATTTTCCTTTACGCCCGATGGGTCTGCAGATTCCACCGCCTCACGGCGTTCTCCGCCGCCGTTCCGCCGCCGCAAGGGCTCGATCCGG
CCGCGATCCTCTGCCTTCCGATTACCCTGCACAAGCCGGCAGCGGCGGCGACGGCGGAGTGCTGTATTTGCTTGGGCGTGTTTGAGGAAGGGGACAAAGTTAAGGTTCTG
CCGCCGTGCCGCCATTATTTTCACTCCGAGTGCGTCGACCAGTGGCTCCGGTCACAGTCGAGCTGCCCGCTTTGCCGAGTCTCTCTACGTGTCGATCTCTCTGCCAATCT
TGAACAGGTC
Protein sequenceShow/hide protein sequence
MSTSQVSPSLPWHFTEFDDRIFQIRGRPFFFVVVLFAVILLVTFIFLYARWVCRFHRLTAFSAAVPPPQGLDPAAILCLPITLHKPAAAATAECCICLGVFEEGDKVKVL
PPCRHYFHSECVDQWLRSQSSCPLCRVSLRVDLSANLEQV