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MS017193 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017193
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein EARLY FLOWERING 4-like
Genome locationscaffold33:562483..562839
RNA-Seq ExpressionMS017193
SyntenyMS017193
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]2.4e-4386.51Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKTKPSA  TTTTTTTTSDDG   GF DE DA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFSS F     RNGKRGSSN
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

XP_022156910.1 protein EARLY FLOWERING 4-like [Momordica charantia]3.9e-54100Show/hide
Query:  MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFS
        MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFS
Subjt:  MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFS

Query:  SDFSSSFRNGKRGSSNQNG
        SDFSSSFRNGKRGSSNQNG
Subjt:  SDFSSSFRNGKRGSSNQNG

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]2.4e-4386.51Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKTKPSA  TTTTTTTTSDDG   GF DE DA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFSS F     RNGKRGSSN
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]2.7e-4284.92Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSKTKPSA  TTTTTTTTSDDG   GF DE D +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFSS F     RNGKRGSSN
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

XP_038892867.1 protein EARLY FLOWERING 4-like [Benincasa hispida]9.1e-4381.54Show/hide
Query:  MADNNSRRKSKTKPSATTTTTTTTS-------DDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVV
        MADNN RRKSK KPSATTTTTTTT+        DG F DE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSR+PSNMVDNVALIQELNGNISKVV
Subjt:  MADNNSRRKSKTKPSATTTTTTTTS-------DDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVV

Query:  SMYSDFSSDFSSSF-----RNGKRGSSNQN
        SMYSDFSSDFSS+F     RNGKRGS+N N
Subjt:  SMYSDFSSDFSSSF-----RNGKRGSSNQN

TrEMBL top hitse value%identityAlignment
A0A1S3CIT1 uncharacterized protein LOC1035014407.1e-4181.75Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDD---GGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MADNN RRKSK KPSA  TTTTTTTTSDD     F DE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDD---GGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFS++F     R+GKRG++N
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

A0A5A7SR92 Protein EARLY FLOWERING 47.1e-4181.75Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDD---GGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MADNN RRKSK KPSA  TTTTTTTTSDD     F DE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDD---GGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFS++F     R+GKRG++N
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

A0A6J1DRN5 protein EARLY FLOWERING 4-like1.9e-54100Show/hide
Query:  MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFS
        MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFS
Subjt:  MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFS

Query:  SDFSSSFRNGKRGSSNQNG
        SDFSSSFRNGKRGSSNQNG
Subjt:  SDFSSSFRNGKRGSSNQNG

A0A6J1GYX8 protein EARLY FLOWERING 4-like1.2e-4386.51Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKTKPSA  TTTTTTTTSDDG   GF DE DA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFSS F     RNGKRGSSN
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

A0A6J1IH33 protein EARLY FLOWERING 4-like1.3e-4284.92Show/hide
Query:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSKTKPSA  TTTTTTTTSDDG   GF DE D +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVSM
Subjt:  MADNNSRRKSKTKPSA--TTTTTTTTSDDG---GFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSSSF-----RNGKRGSSN
        YSDFSSDFSS F     RNGKRGSSN
Subjt:  YSDFSSDFSSSF-----RNGKRGSSN

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 46.4e-2369.62Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRG
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FSS F  GK G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRG

O80877 Protein ELF4-LIKE 18.4e-1551.28Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKR
        D EVW +    F++ Q  LD+NR LIQ+VNENH SR+P N+  NV LI E+NGNIS+V+ +YSD S +F+  F   +R
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKR

Q570U6 Protein ELF4-LIKE 43.0e-1243.33Show/hide
Query:  GFSDEG--DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSN
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+ S      G S+
Subjt:  GFSDEG--DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSN

Q8S8F5 Protein ELF4-LIKE 37.1e-1442.17Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSNQ
        D ++  +F+++F QVQ++LD NR+LI ++N+NH+S++P N+  NV LI+ELN N+ +V  +Y D S++FS S      G S++
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSNQ

Q94BS8 Protein ELF4-LIKE 21.6e-1041.98Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSS
        D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+ S      G S
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 42.1e-1343.33Show/hide
Query:  GFSDEG--DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSN
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+ S      G S+
Subjt:  GFSDEG--DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSN

AT1G17455.2 ELF4-like 42.1e-1343.33Show/hide
Query:  GFSDEG--DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSN
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+ S      G S+
Subjt:  GFSDEG--DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSN

AT2G06255.1 ELF4-like 35.0e-1542.17Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSNQ
        D ++  +F+++F QVQ++LD NR+LI ++N+NH+S++P N+  NV LI+ELN N+ +V  +Y D S++FS S      G S++
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRGSSNQ

AT2G29950.1 ELF4-like 15.9e-1651.28Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKR
        D EVW +    F++ Q  LD+NR LIQ+VNENH SR+P N+  NV LI E+NGNIS+V+ +YSD S +F+  F   +R
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKR

AT2G40080.1 Protein of unknown function (DUF1313)4.5e-2469.62Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRG
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FSS F  GK G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNGKRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATAACAACTCCCGCCGGAAATCTAAAACCAAGCCGTCGGCCACGACGACGACCACCACCACCACCAGCGACGACGGCGGCTTCTCCGACGAAGGCGACGCCGA
GGTTTGGGCCTCCTTTGACCAGACTTTCCGGCAGGTCCAATCGGTGCTGGACAGAAACAGAGTCCTGATTCAGCAGGTGAATGAGAACCACCAATCTCGAGTTCCAAGTA
ACATGGTGGACAACGTGGCCCTCATCCAAGAACTCAACGGCAACATCTCCAAAGTGGTCTCTATGTACTCTGATTTCTCCTCTGATTTCTCCTCTTCTTTCAGAAATGGC
AAGAGAGGCAGCAGCAACCAAAATGGT
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATAACAACTCCCGCCGGAAATCTAAAACCAAGCCGTCGGCCACGACGACGACCACCACCACCACCAGCGACGACGGCGGCTTCTCCGACGAAGGCGACGCCGA
GGTTTGGGCCTCCTTTGACCAGACTTTCCGGCAGGTCCAATCGGTGCTGGACAGAAACAGAGTCCTGATTCAGCAGGTGAATGAGAACCACCAATCTCGAGTTCCAAGTA
ACATGGTGGACAACGTGGCCCTCATCCAAGAACTCAACGGCAACATCTCCAAAGTGGTCTCTATGTACTCTGATTTCTCCTCTGATTTCTCCTCTTCTTTCAGAAATGGC
AAGAGAGGCAGCAGCAACCAAAATGGT
Protein sequenceShow/hide protein sequence
MADNNSRRKSKTKPSATTTTTTTTSDDGGFSDEGDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRVPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSSFRNG
KRGSSNQNG