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MS017198 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017198
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold33:632117..632407
RNA-Seq ExpressionMS017198
SyntenyMS017198
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]6.2e-0530.61Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNW-DVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W+ PP + W L+ D +WSE  + GG+GW++ +    ++L GN     C +        ++ +  LE++ I+ G++ +       I +ESDSVEV++L+
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNW-DVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.6e-0530.93Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W PP  ++W L+ + AW      GG+GW++R+            G    ++  +  A +++  LEV+AI EG+R +       I +ESDS+E + LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.0e-0530.93Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W PP  ++W L+ D AW       G+GW++R+            G    +   +  A +++  LEV+AI EG+R +       I +ESDS+E + LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]8.0e-0530.93Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W PP  ++W L+ D AW       G+GW++R+            G    +   +  A +++  LEV+AI EG+R +       I +ESDS+E + LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.7e-1646.46Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWD-VVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLG-WVAYSIQVESDSVEVVKLL
        W PPP H WTL+AD +WS+   +GG+GW++R+WD  ++L GN+FV AC            +VK+LE  AILEG+RNL    V   + +E+DS EV  LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWD-VVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLG-WVAYSIQVESDSVEVVKLL

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.7e-0530.93Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W PP  ++W L+ + AW      GG+GW++R+            G    ++  +  A +++  LEV+AI EG+R +       I +ESDS+E + LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

A0A6J1CQG0 uncharacterized protein LOC1110132163.0e-0530.61Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNW-DVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W+ PP + W L+ D +WSE  + GG+GW++ +    ++L GN     C +        ++ +  LE++ I+ G++ +       I +ESDSVEV++L+
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNW-DVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.9e-0530.93Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W PP  ++W L+ D AW       G+GW++R+            G    +   +  A +++  LEV+AI EG+R +       I +ESDS+E + LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

A0A6J1DNV9 uncharacterized protein LOC1110224033.8e-1646.46Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWD-VVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLG-WVAYSIQVESDSVEVVKLL
        W PPP H WTL+AD +WS+   +GG+GW++R+WD  ++L GN+FV AC            +VK+LE  AILEG+RNL    V   + +E+DS EV  LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWD-VVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLG-WVAYSIQVESDSVEVVKLL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.9e-0530.93Show/hide
Query:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL
        W PP  ++W L+ D AW       G+GW++R+            G    +   +  A +++  LEV+AI EG+R +       I +ESDS+E + LL
Subjt:  WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAACCCCCCACCTCGTCATACATGGACTTTGAGTGCTGATGTGGCTTGGTCGGAGATCCATCAGAAAGGGGGTTTGGGTTGGGTGGTGCGAAATTGGGATGTTGTTAT
CCTTGAGGGCAATCAGTTCGTTGGCGCCTGTTTTCTCTCCAACCTTAGTCTCTACAGCGCCCGACAAAGTGTGAAGATGCTGGAGGTCTTGGCCATATTGGAGGGAATGC
GAAATTTGCTTGGGTGGGTGGCTTACTCAATTCAAGTAGAGTCTGATTCAGTTGAAGTGGTGAAATTGCTC
mRNA sequenceShow/hide mRNA sequence
TGGAACCCCCCACCTCGTCATACATGGACTTTGAGTGCTGATGTGGCTTGGTCGGAGATCCATCAGAAAGGGGGTTTGGGTTGGGTGGTGCGAAATTGGGATGTTGTTAT
CCTTGAGGGCAATCAGTTCGTTGGCGCCTGTTTTCTCTCCAACCTTAGTCTCTACAGCGCCCGACAAAGTGTGAAGATGCTGGAGGTCTTGGCCATATTGGAGGGAATGC
GAAATTTGCTTGGGTGGGTGGCTTACTCAATTCAAGTAGAGTCTGATTCAGTTGAAGTGGTGAAATTGCTC
Protein sequenceShow/hide protein sequence
WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL