; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017235 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017235
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold33:880486..880899
RNA-Seq ExpressionMS017235
SyntenyMS017235
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388431.1 uncharacterized protein LOC107178124 [Citrus sinensis]5.5e-0727.94Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL
        WT P    +KLNV+AA   + Q  GLG VI+N E  ++ A I+F     ++ ++E   M  G     N     + +   S ++   +       TE+ W+
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL

Query:  TEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE
           IQ+L++  + + + HI    N +AH+L ++  E
Subjt:  TEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.1e-0734.74Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFT
        W+ P  + WKLN +A+W EE + GG+GW++ +    I+ AG   I EK  I  LE + ++ G   ++      +YL   S+++ RL+ KE  D T
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]5.8e-1736.03Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL
        W  P  +SWKLN NAAW  +   GG+GW++++ +  +I+A    I  + NI +LE + + EG   +   +   ++L   SL+   L+ ++  D TE++WL
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL

Query:  TEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE
         EEI  +++   +VS+ HI  EAN VAH L R   E
Subjt:  TEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.7e-1230.88Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDN-PYGDDVYLAIYSLDIKRLIIKEMDDFTEVLW
        W  P  H W LN +A+W +    GG+GW+I++ +  I+ AG  F+    N+K LE   +LEG  NL N      +++   S +++ L+ ++ +D T+  W
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDN-PYGDDVYLAIYSLDIKRLIIKEMDDFTEVLW

Query:  LTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTS
        + EEI  L +   +++   +  E N  AH+L +  S
Subjt:  LTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-1434.03Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGF--------HNLDNPYGDDVYLAIYSLDIKRLIIKEMD
        W  P  +SWKLN +AAW  +   GG+GW++++ +  +I+A    I  + NI +LE + + EG           +   +   ++L   SL+   L+ ++  
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGF--------HNLDNPYGDDVYLAIYSLDIKRLIIKEMD

Query:  DFTEVLWLTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE
        D TE++WL EEI  ++E   +VS+ HI  EAN VAH L R   E
Subjt:  DFTEVLWLTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134122.8e-1736.03Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL
        W  P  +SWKLN NAAW  +   GG+GW++++ +  +I+A    I  + NI +LE + + EG   +   +   ++L   SL+   L+ ++  D TE++WL
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL

Query:  TEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE
         EEI  +++   +VS+ HI  EAN VAH L R   E
Subjt:  TEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE

A0A6J1CQG0 uncharacterized protein LOC1110132165.4e-0834.74Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFT
        W+ P  + WKLN +A+W EE + GG+GW++ +    I+ AG   I EK  I  LE + ++ G   ++      +YL   S+++ RL+ KE  D T
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFT

A0A6J1D4B6 uncharacterized protein LOC1110171814.5e-0730.3Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL
        WT P  H WKLNV+A W +    GGLGW++++ E   I A          +K L   + LE         G  + +    L++  +I K     TEV  +
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWL

Query:  TEEIQALLEVKSVVSICHIRLEANWVAHALVR
         E+I   +E   +    H+ ++AN VAH + R
Subjt:  TEEIQALLEVKSVVSICHIRLEANWVAHALVR

A0A6J1DNV9 uncharacterized protein LOC1110224034.7e-1230.88Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDN-PYGDDVYLAIYSLDIKRLIIKEMDDFTEVLW
        W  P  H W LN +A+W +    GG+GW+I++ +  I+ AG  F+    N+K LE   +LEG  NL N      +++   S +++ L+ ++ +D T+  W
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDN-PYGDDVYLAIYSLDIKRLIIKEMDDFTEVLW

Query:  LTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTS
        + EEI  L +   +++   +  E N  AH+L +  S
Subjt:  LTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTS

A0A6J1DSV1 uncharacterized protein LOC1110236087.7e-1534.03Show/hide
Query:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGF--------HNLDNPYGDDVYLAIYSLDIKRLIIKEMD
        W  P  +SWKLN +AAW  +   GG+GW++++ +  +I+A    I  + NI +LE + + EG           +   +   ++L   SL+   L+ ++  
Subjt:  WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGF--------HNLDNPYGDDVYLAIYSLDIKRLIIKEMD

Query:  DFTEVLWLTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE
        D TE++WL EEI  ++E   +VS+ HI  EAN VAH L R   E
Subjt:  DFTEVLWLTEEIQALLEVKSVVSICHIRLEANWVAHALVRVTSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGACCTTACCTCATCCCCACTCTTGGAAACTTAATGTTAATGCAGCTTGGTTCGAAGAGCACCAGCACGGTGGATTGGGGTGGGTGATTCAAAATGGGGAAGACACAAT
TATTCAAGCTGGTATCTCCTTTATTTGGGAGAAAATCAATATCAAACACCTAGAAACGTTGGTTATGTTAGAAGGGTTTCACAATTTGGACAATCCATATGGTGATGATG
TTTACCTAGCAATATATTCGTTGGATATCAAACGGCTAATCATTAAGGAGATGGATGACTTCACAGAAGTTCTTTGGCTGACCGAAGAAATTCAGGCGTTGTTGGAGGTG
AAAAGTGTTGTCTCAATCTGCCATATCAGACTAGAAGCGAATTGGGTGGCTCATGCCCTAGTTCGTGTGACGTCAGAAGCTGAA
mRNA sequenceShow/hide mRNA sequence
TGGACCTTACCTCATCCCCACTCTTGGAAACTTAATGTTAATGCAGCTTGGTTCGAAGAGCACCAGCACGGTGGATTGGGGTGGGTGATTCAAAATGGGGAAGACACAAT
TATTCAAGCTGGTATCTCCTTTATTTGGGAGAAAATCAATATCAAACACCTAGAAACGTTGGTTATGTTAGAAGGGTTTCACAATTTGGACAATCCATATGGTGATGATG
TTTACCTAGCAATATATTCGTTGGATATCAAACGGCTAATCATTAAGGAGATGGATGACTTCACAGAAGTTCTTTGGCTGACCGAAGAAATTCAGGCGTTGTTGGAGGTG
AAAAGTGTTGTCTCAATCTGCCATATCAGACTAGAAGCGAATTGGGTGGCTCATGCCCTAGTTCGTGTGACGTCAGAAGCTGAA
Protein sequenceShow/hide protein sequence
WTLPHPHSWKLNVNAAWFEEHQHGGLGWVIQNGEDTIIQAGISFIWEKINIKHLETLVMLEGFHNLDNPYGDDVYLAIYSLDIKRLIIKEMDDFTEVLWLTEEIQALLEV
KSVVSICHIRLEANWVAHALVRVTSEAE