; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017241 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017241
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSHSP domain-containing protein
Genome locationscaffold33:889192..889680
RNA-Seq ExpressionMS017241
SyntenyMS017241
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS70261.1 Os01g0136050, partial [Oryza sativa Japonica Group]3.4e-3263.69Show/hide
Query:  MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVS
        +SM   SGF +S LGTVTV TPFSMLAFT STLAFSGS N  MN PLLRS  CHLSF SS SLL  PLI  TLPSSTSTFTSSFL PGRSALK    GVS
Subjt:  MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVS

Query:  FQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS
        FQS R LAKA VS +E      A   E   PS GS  S+ KGS  LLR    ++G+S
Subjt:  FQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS

CAG1834096.1 unnamed protein product [Musa acuminata subsp. malaccensis]6.2e-3462.5Show/hide
Query:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ
        MDL SGF +  LGTVTV TPFSM AFT STLAFSG RNL  N PLLRS  C +S FSSCS L SPLI RT PSSTST TSSFL PG+SAL   A GVSFQ
Subjt:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ

Query:  SIRVLAKAEVSEAEEGALANAVELE--NGKPSSGSHTSSEKGSKMLLRRPPKMLGISDML
        S R  A A   +A  G +A   E E   GKP  GS  S EKGSKM  RR P   G+SD+L
Subjt:  SIRVLAKAEVSEAEEGALANAVELE--NGKPSSGSHTSSEKGSKMLLRRPPKMLGISDML

KAB8079852.1 hypothetical protein EE612_000127, partial [Oryza sativa]7.6e-3263.06Show/hide
Query:  MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVS
        +SM   SG  +S LGTVTV TPFSMLAFT STLAFSGSRN  MN PLLRS  CHLSF SS SLL  PLI  TLPSSTSTFTSSF  PGRSALK    GVS
Subjt:  MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVS

Query:  FQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS
        FQS R LAKA VS +E      A   E   PS GS  S+ KGS  LLR    ++G+S
Subjt:  FQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS

KVI11914.1 hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus]1.7e-3664.05Show/hide
Query:  SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRV
        +GFF+S  GTV V TPFS+ AFT S  AFSG+ NLL+NFPLLRS LCH+SF SS S  LSPLIC+ L SSTSTFTSSFLIPGRSALK  A GVSFQS RV
Subjt:  SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRV

Query:  LAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDM
          KAEVS  E    ++  E+  GK  +GS  S   GSKML RRPPK LG+ D+
Subjt:  LAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDM

VFQ82571.1 unnamed protein product [Cuscuta campestris]1.6e-3765.22Show/hide
Query:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ
        MDL SGFF+S LGTVTV TPFSM AFT S  AFSGSRN   N PLLRS  CHLS FSS SLLLSPLIC+ LPSSTSTFTSSF  PGRSAL  W  GVSFQ
Subjt:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ

Query:  SIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ
        SIR  A A+VS      L      ENG P  GS  S E GS   LR RPPK LGI ++L Q
Subjt:  SIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KSC0 Uncharacterized protein2.4e-6385.8Show/hide
Query:  MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVS
        MSMDLISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGS NLLMNFP LRSILCHLSFFSSCSLLLSPLIC+TLPSSTST TSSFLIPGRSALKMWACGVS
Subjt:  MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVS

Query:  FQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDMLLQ
        FQS+RVLAKAEVS AEEGALA   E E GKPS GS  S+EKGSK LLRRPPKMLG   M+++
Subjt:  FQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDMLLQ

A0A0D9Z549 SHSP domain-containing protein1.4e-3462.73Show/hide
Query:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ
        MDL SGF  S LGTVTV TPFSM A   S L FSGSRNL  N PLLRS  CHLS FSSCSLL SPLICR LPSSTST TSSF  PG SAL   A GVSFQ
Subjt:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ

Query:  SIRVLAKAEVSE----AEEGALANAVEL--ENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS
        S+R  AKA VSE     ++G +   + L    GKPS GS  S EKGS MLLRR   ++GI+
Subjt:  SIRVLAKAEVSE----AEEGALANAVEL--ENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS

A0A103YMN4 Uncharacterized protein (Fragment)8.5e-3764.05Show/hide
Query:  SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRV
        +GFF+S  GTV V TPFS+ AFT S  AFSG+ NLL+NFPLLRS LCH+SF SS S  LSPLIC+ L SSTSTFTSSFLIPGRSALK  A GVSFQS RV
Subjt:  SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRV

Query:  LAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDM
          KAEVS  E    ++  E+  GK  +GS  S   GSKML RRPPK LG+ D+
Subjt:  LAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDM

A0A484M1B1 Uncharacterized protein7.7e-3865.22Show/hide
Query:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ
        MDL SGFF+S LGTVTV TPFSM AFT S  AFSGSRN   N PLLRS  CHLS FSS SLLLSPLIC+ LPSSTSTFTSSF  PGRSAL  W  GVSFQ
Subjt:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ

Query:  SIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ
        SIR  A A+VS      L      ENG P  GS  S E GS   LR RPPK LGI ++L Q
Subjt:  SIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ

A0A7C9D9Y3 Uncharacterized protein6.9e-3966.04Show/hide
Query:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ
        M   SGFFSS LGTVTV TPFS+ AFTSS LAFSG RN   N PL RS  CHLSFFSSCSL+LSPLI R LPSSTSTFTSSFL PGRS L  WA GVSFQ
Subjt:  MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQ

Query:  SIRVLAKAEVSEAEE-GALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDML
        S  VL   +VS A E G      E +N  PS+GS TS E GS  L+ R PK LGISDM+
Subjt:  SIRVLAKAEVSEAEE-GALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCTTCAACTTTGGCATTCTCCGG
CAGCCGGAATCTCCTCATGAACTTTCCACTGCTTCGTTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTC
CCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCA
GAGGTTTCAGAAGCAGAGGAAGGGGCATTGGCCAATGCGGTGGAATTGGAAAATGGGAAGCCATCGAGCGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCT
TCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
mRNA sequenceShow/hide mRNA sequence
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCTTCAACTTTGGCATTCTCCGG
CAGCCGGAATCTCCTCATGAACTTTCCACTGCTTCGTTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTC
CCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCA
GAGGTTTCAGAAGCAGAGGAAGGGGCATTGGCCAATGCGGTGGAATTGGAAAATGGGAAGCCATCGAGCGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCT
TCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Protein sequenceShow/hide protein sequence
MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKA
EVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDMLLQI