; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017261 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017261
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-type domain-containing protein
Genome locationscaffold33:1085987..1086394
RNA-Seq ExpressionMS017261
SyntenyMS017261
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600035.1 Zinc finger protein 10, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2957.55Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG
        + E H LWRQI N  +  +PS   +E AFAEDT AAAVWPPRSY+CNFCMRQFRSAQALGGHMNVHRRDRARLQN+P+R F  +PTP+  +++  F    
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG

Query:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL
           DS +C+    KR+KVCVS        +++LDLEL+L
Subjt:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL

XP_004151402.2 zinc finger protein 11 [Cucumis sativus]6.8e-2653.62Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSAT--FNGH
        + + H LWRQI         S WDQE AFA+D   AAVWPPRSY+C FCMRQFRSAQALGGHMNVHRRDRA+LQN P+RPF     +PT    T  F+  
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSAT--FNGH

Query:  DEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL
        + DS        K +    SS S+SS+ +  LDLEL+L
Subjt:  DEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL

XP_008461701.1 PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]1.7e-2452.78Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRP--FRRPTPSPTVKSATFNGH
        + E H +WRQI         S WDQE AFA+D   AAVWPPRSY+C FCMRQFRSAQALGGHMNVHRRDRA+LQN P+R   F +PTP+  + +  F+  
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRP--FRRPTPSPTVKSATFNGH

Query:  DEDSYNCVKNNN------KRSKVCVSSFSASSSLDQELDLELRL
                KNNN      K+ K+  SS S+SS+ +  LDLEL+L
Subjt:  DEDSYNCVKNNN------KRSKVCVSSFSASSSLDQELDLELRL

XP_022988302.1 zinc finger protein 10-like [Cucurbita maxima]1.0e-2957.55Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG
        + E H LWRQI N  +  +PS   +E AFAEDT AAAVWPPRSY+CNFCMRQFRSAQALGGHMNVHRRDRARLQN+P+R F  +PTP+  +++  F    
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG

Query:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL
           DS +C+    KR+KVCVS        +++LDLEL+L
Subjt:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL

XP_023542190.1 zinc finger protein 10-like [Cucurbita pepo subsp. pepo]5.9e-3057.55Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG
        + E H LWRQI N  +  +PS   +E AFAEDT AAAVWPPRSY+CNFCMRQFRSAQALGGHMNVHRRDRARLQN+P+R F  +PTP+  +++  F    
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG

Query:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL
        +  DS +C+    KR+KVCVS        +++LDLEL+L
Subjt:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL

TrEMBL top hitse value%identityAlignment
A0A0A0KLQ3 C2H2-type domain-containing protein3.3e-2653.62Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSAT--FNGH
        + + H LWRQI         S WDQE AFA+D   AAVWPPRSY+C FCMRQFRSAQALGGHMNVHRRDRA+LQN P+RPF     +PT    T  F+  
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSAT--FNGH

Query:  DEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL
        + DS        K +    SS S+SS+ +  LDLEL+L
Subjt:  DEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL

A0A1S3CGM6 transcriptional regulator SUPERMAN-like8.1e-2552.78Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRP--FRRPTPSPTVKSATFNGH
        + E H +WRQI         S WDQE AFA+D   AAVWPPRSY+C FCMRQFRSAQALGGHMNVHRRDRA+LQN P+R   F +PTP+  + +  F+  
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRP--FRRPTPSPTVKSATFNGH

Query:  DEDSYNCVKNNN------KRSKVCVSSFSASSSLDQELDLELRL
                KNNN      K+ K+  SS S+SS+ +  LDLEL+L
Subjt:  DEDSYNCVKNNN------KRSKVCVSSFSASSSLDQELDLELRL

A0A5A7UA35 Transcriptional regulator SUPERMAN-like8.1e-2552.78Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRP--FRRPTPSPTVKSATFNGH
        + E H +WRQI         S WDQE AFA+D   AAVWPPRSY+C FCMRQFRSAQALGGHMNVHRRDRA+LQN P+R   F +PTP+  + +  F+  
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRP--FRRPTPSPTVKSATFNGH

Query:  DEDSYNCVKNNN------KRSKVCVSSFSASSSLDQELDLELRL
                KNNN      K+ K+  SS S+SS+ +  LDLEL+L
Subjt:  DEDSYNCVKNNN------KRSKVCVSSFSASSSLDQELDLELRL

A0A6J1JCP1 zinc finger protein 10-like4.9e-3057.55Show/hide
Query:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG
        + E H LWRQI N  +  +PS   +E AFAEDT AAAVWPPRSY+CNFCMRQFRSAQALGGHMNVHRRDRARLQN+P+R F  +PTP+  +++  F    
Subjt:  LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFR-RPTPSPTVKSATF--NG

Query:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL
           DS +C+    KR+KVCVS        +++LDLEL+L
Subjt:  HDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL

D7LKF9 Zinc finger family protein1.1e-1852.54Show/hide
Query:  SQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARL-QNDPSRPFRRPTPSPTVKSATFNG--HDEDSYNCVKNNN--
        +  + SSW +E AFAED AA ++WPPRSYTC+FC R+F+SAQALGGHMNVHRRDRARL Q D    F +   SP   S   N   H+  SY  V N+   
Subjt:  SQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARL-QNDPSRPFRRPTPSPTVKSATFNG--HDEDSYNCVKNNN--

Query:  --KRSKVCVSSFSASSSL
          K    CV   S+SSSL
Subjt:  --KRSKVCVSSFSASSSL

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 108.9e-2153.04Show/hide
Query:  RPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARL-QNDPSRPFRRPTPSPTVKS--ATFNGHDEDSYNCVKNNN----K
        + SSW +E AFAED AA ++WPPRSYTC+FC R+F+SAQALGGHMNVHRRDRARL Q D    F + + SP   S   + N H+   Y  V N      K
Subjt:  RPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARL-QNDPSRPFRRPTPSPTVKS--ATFNGHDEDSYNCVKNNN----K

Query:  RSKVCVSSFSASSSL
            CV   S+SSSL
Subjt:  RSKVCVSSFSASSSL

Q38895 Transcriptional regulator SUPERMAN1.2e-1451.16Show/hide
Query:  YSQTRPSSW---DQETAFAE-DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFN
        Y + R S W   D +    + D      WPPRSYTC+FC R+FRSAQALGGHMNVHRRDRARL+   S P    TPSP   +  ++
Subjt:  YSQTRPSSW---DQETAFAE-DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFN

Q9LHS9 Probable transcriptional regulator RABBIT EARS5.2e-1350Show/hide
Query:  TRPSS-------WDQETAFAE----DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSP
        TRPSS       + +E AFA           +WPPRSY+C+FC R+F+SAQALGGHMNVHRRDRARL+     P      +P
Subjt:  TRPSS-------WDQETAFAE----DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSP

Q9SLB8 Zinc finger protein 118.1e-1451.16Show/hide
Query:  WPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPS--------RPFRRPTP--SPTVKSATFNGHDEDSYNCVKNNNKRSK
        WPP++YTC+FC R+FRSAQALGGHMNVHRRDRA+L+  PS         P   P P  S +  S+T   H E S       N+RSK
Subjt:  WPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPS--------RPFRRPTP--SPTVKSATFNGHDEDSYNCVKNNNKRSK

Q9SR34 Transcriptional regulator TAC15.1e-0872.73Show/hide
Query:  RSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQ
        RSY C+FC+R F +AQALGGHMN+HRRDRA+L+
Subjt:  RSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQ

Arabidopsis top hitse value%identityAlignment
AT2G37740.1 zinc-finger protein 106.3e-2253.04Show/hide
Query:  RPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARL-QNDPSRPFRRPTPSPTVKS--ATFNGHDEDSYNCVKNNN----K
        + SSW +E AFAED AA ++WPPRSYTC+FC R+F+SAQALGGHMNVHRRDRARL Q D    F + + SP   S   + N H+   Y  V N      K
Subjt:  RPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARL-QNDPSRPFRRPTPSPTVKS--ATFNGHDEDSYNCVKNNN----K

Query:  RSKVCVSSFSASSSL
            CV   S+SSSL
Subjt:  RSKVCVSSFSASSSL

AT2G42410.1 zinc finger protein 115.7e-1551.16Show/hide
Query:  WPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPS--------RPFRRPTP--SPTVKSATFNGHDEDSYNCVKNNNKRSK
        WPP++YTC+FC R+FRSAQALGGHMNVHRRDRA+L+  PS         P   P P  S +  S+T   H E S       N+RSK
Subjt:  WPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPS--------RPFRRPTP--SPTVKSATFNGHDEDSYNCVKNNNKRSK

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein8.9e-1651.16Show/hide
Query:  YSQTRPSSW---DQETAFAE-DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFN
        Y + R S W   D +    + D      WPPRSYTC+FC R+FRSAQALGGHMNVHRRDRARL+   S P    TPSP   +  ++
Subjt:  YSQTRPSSW---DQETAFAE-DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFN

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein4.4e-1553.75Show/hide
Query:  SWDQETAFAEDT---AAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFNGH
        SW+ + AF +DT    +   WPPRSYTCNFC R+FRSAQALGGHMNVHRRDRA           R     TV +A  +GH
Subjt:  SWDQETAFAEDT---AAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFNGH

AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein3.7e-1450Show/hide
Query:  TRPSS-------WDQETAFAE----DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSP
        TRPSS       + +E AFA           +WPPRSY+C+FC R+F+SAQALGGHMNVHRRDRARL+     P      +P
Subjt:  TRPSS-------WDQETAFAE----DTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCCGGAACCCCACCTGCTGTGGAGGCAAATTTTCAACAACTACTCCCAAACGAGGCCGTCCAGCTGGGATCAGGAGACCGCCTTCGCCGAGGACACCGCCGCCGCCGC
CGTGTGGCCGCCCCGCTCCTACACCTGCAACTTCTGTATGCGCCAATTCCGGTCCGCCCAGGCTCTCGGTGGCCACATGAACGTTCACCGCCGGGACCGGGCCCGCCTCC
AAAACGATCCCAGCCGTCCCTTCCGGCGGCCTACGCCTTCCCCCACCGTCAAATCTGCCACCTTTAACGGTCACGATGAAGATTCTTATAATTGCGTGAAAAATAATAAT
AAGAGATCTAAAGTTTGTGTTTCTTCATTCTCTGCTTCTTCTTCTTTGGATCAGGAGCTGGACCTTGAGCTCAGACTT
mRNA sequenceShow/hide mRNA sequence
CTGCCGGAACCCCACCTGCTGTGGAGGCAAATTTTCAACAACTACTCCCAAACGAGGCCGTCCAGCTGGGATCAGGAGACCGCCTTCGCCGAGGACACCGCCGCCGCCGC
CGTGTGGCCGCCCCGCTCCTACACCTGCAACTTCTGTATGCGCCAATTCCGGTCCGCCCAGGCTCTCGGTGGCCACATGAACGTTCACCGCCGGGACCGGGCCCGCCTCC
AAAACGATCCCAGCCGTCCCTTCCGGCGGCCTACGCCTTCCCCCACCGTCAAATCTGCCACCTTTAACGGTCACGATGAAGATTCTTATAATTGCGTGAAAAATAATAAT
AAGAGATCTAAAGTTTGTGTTTCTTCATTCTCTGCTTCTTCTTCTTTGGATCAGGAGCTGGACCTTGAGCTCAGACTT
Protein sequenceShow/hide protein sequence
LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFNGHDEDSYNCVKNNN
KRSKVCVSSFSASSSLDQELDLELRL