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MS017359 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017359
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold322:154096..154449
RNA-Seq ExpressionMS017359
SyntenyMS017359
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0005622 - intracellular (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65485.1 hypothetical protein VITISV_029475 [Vitis vinifera]5.0e-1743.3Show/hide
Query:  KLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        K PH  LSP +C +CM + ETVDHLFLHC  +  +W  +  L       PR I D ++  + G +   +  VLW  A  AL+W +W ERN R+FEDK
Subjt:  KLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

RVW12714.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.1e-1643.16Show/hide
Query:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PH  LSP++C +CM + ETVDHLFLHC     +W  +  L  +    PR I D     + G     +  VLW  A  AL+W +W+ERN R+FEDK
Subjt:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

RVW20303.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.5e-1842.16Show/hide
Query:  NIYNWKLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFE
        ++  W+ P+ TLSP +C +CM   ETVDHLFLHC     +W  +  L  +    PR + D IA  + G     +  VLW  A  A+LW +W+ERN R+FE
Subjt:  NIYNWKLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFE

Query:  DK
        DK
Subjt:  DK

RVW52490.1 putative ribonuclease H protein [Vitis vinifera]5.0e-1744.21Show/hide
Query:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PH  LSP++C +CM + ETVDHLFLHC     +W  +  L  +    PR I D     + G     K  VLW  A  AL+W +W+ERN R+FEDK
Subjt:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

RVW92607.1 putative ribonuclease H protein [Vitis vinifera]1.1e-1643.16Show/hide
Query:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PH  LSP++C +CM + ETVDHLFLHC     +W  +  L  +    PR I D     + G     +  VLW  A  AL+W +W+ERN R+FEDK
Subjt:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

TrEMBL top hitse value%identityAlignment
A0A438CAL5 Transposon TX1 uncharacterized 149 kDa protein1.7e-1842.16Show/hide
Query:  NIYNWKLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFE
        ++  W+ P+ TLSP +C +CM   ETVDHLFLHC     +W  +  L  +    PR + D IA  + G     +  VLW  A  A+LW +W+ERN R+FE
Subjt:  NIYNWKLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFE

Query:  DK
        DK
Subjt:  DK

A0A438EXL3 Putative ribonuclease H protein2.4e-1744.21Show/hide
Query:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PH  LSP++C +CM + ETVDHLFLHC     +W  +  L  +    PR I D     + G     K  VLW  A  AL+W +W+ERN R+FEDK
Subjt:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

A0A438EZ36 LINE-1 retrotransposable element ORF2 protein5.4e-1743.16Show/hide
Query:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PH  LSP++C +CM + ETVDHLFLHC     +W  +  L  +    PR I D     + G     +  VLW  A  AL+W +W+ERN R+FEDK
Subjt:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

A5BCI8 BIG2 domain-containing protein2.4e-1743.3Show/hide
Query:  KLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        K PH  LSP +C +CM + ETVDHLFLHC  +  +W  +  L       PR I D ++  + G +   +  VLW  A  AL+W +W ERN R+FEDK
Subjt:  KLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

A5BTG1 zf-RVT domain-containing protein5.4e-1743.16Show/hide
Query:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PH  LSP++C +CM + ETVDHLFLHC     +W  +  L  +    PR I D     + G     +  VLW  A  AL+W +W+ERN R+FEDK
Subjt:  PHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45063.1 copper ion binding;electron carriers2.7e-0834.83Show/hide
Query:  PSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK
        PS+C +C + +ET  H+F  CPF  +VW F  S  +  +  PR  +D         + K  A++L   A +A ++ IW+ERN RL  +K
Subjt:  PSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKERNCRLFEDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAAATTTACTCTTCCCTCTCTACCCCTTCCATCATCTTCCTATGGTAAACATTTATAACTGGAAATTGCCTCATTGGACTCTTTCTCCCTCTGTGTGCACAATGTGTAT
GAGCAACAATGAAACAGTGGACCACCTTTTTCTCCATTGCCCTTTCGTGTCCAAAGTTTGGGGGTTTATAGCTTCTTTGCTAGATTTATCTCTCTGTATTCCTAGAAGAA
TTGAGGATTTCATTGCTGAAGGTTATGGAGGAAGGCAACTCAAGGGCAAAGCTTGGGTTCTTTGGAATTGTGCGGCCCGGGCTCTTTTATGGTCGATATGGAAGGAACGG
AATTGTCGGCTTTTTGAAGATAAG
mRNA sequenceShow/hide mRNA sequence
ATAAATTTACTCTTCCCTCTCTACCCCTTCCATCATCTTCCTATGGTAAACATTTATAACTGGAAATTGCCTCATTGGACTCTTTCTCCCTCTGTGTGCACAATGTGTAT
GAGCAACAATGAAACAGTGGACCACCTTTTTCTCCATTGCCCTTTCGTGTCCAAAGTTTGGGGGTTTATAGCTTCTTTGCTAGATTTATCTCTCTGTATTCCTAGAAGAA
TTGAGGATTTCATTGCTGAAGGTTATGGAGGAAGGCAACTCAAGGGCAAAGCTTGGGTTCTTTGGAATTGTGCGGCCCGGGCTCTTTTATGGTCGATATGGAAGGAACGG
AATTGTCGGCTTTTTGAAGATAAG
Protein sequenceShow/hide protein sequence
INLLFPLYPFHHLPMVNIYNWKLPHWTLSPSVCTMCMSNNETVDHLFLHCPFVSKVWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKGKAWVLWNCAARALLWSIWKER
NCRLFEDK