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MS017363 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017363
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold322:181313..181558
RNA-Seq ExpressionMS017363
SyntenyMS017363
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]2.6e-0435.06Show/hide
Query:  ELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLA
        E LA+L+G++QAQ + C +I++ES++ + ++LL + +  ++   + + +IL+    F S SFN+V R  N   H+LA
Subjt:  ELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLA

KAG8472944.1 hypothetical protein CXB51_034842 [Gossypium anomalum]1.5e-0439.02Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        P +AE LA LQ L+  +    +++MVE +SL  I   + ++    A   ++ DI   AG F    F YV R+ NRS HSLAK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

XP_021727655.1 uncharacterized protein LOC110694792 [Chenopodium quinoa]2.0e-0435.37Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        PL AE  AI+ GL  A     +++ VES+ LQ + +LQ   +  +A+ + V D +    +F+ CSF + PR  N++ H +AK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

XP_021743206.1 uncharacterized protein LOC110709303 [Chenopodium quinoa]2.3e-0541.46Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        P   E LA+L GL+ A     + ++VES+    + LLQ K+   +AS V V+DIL  A  F+ CSF    R+ N++THS+AK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]8.9e-0541.98Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLA
        PL AE LA+L+GL  A  LN +++  ES+SLQ I+LL +   S   SNVW+ DI   A  F   +F +V R+ N++   +A
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLA

TrEMBL top hitse value%identityAlignment
A0A540MJ98 RNase H domain-containing protein3.6e-0438.46Show/hide
Query:  ELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        ELLA+ +GL  AQ + C+ + VES+S++ +      S   ++    V  I + A  FD C+F Y+PR  N +TH LAK
Subjt:  ELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

A0A6J1CNR4 uncharacterized protein LOC1110129504.3e-0541.98Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLA
        PL AE LA+L+GL  A  LN +++  ES+SLQ I+LL +   S   SNVW+ DI   A  F   +F +V R+ N++   +A
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLA

A0A7J9CHG1 Uncharacterized protein8.1e-0432.93Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        P + E +A LQG++    L    +++E +SL  +  LQ K+K ++  N  + D+ + +  F  C FN+V R  N + H LAK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

A0A803LLZ1 Uncharacterized protein1.3e-0439.02Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        PL AE  AIL G+  A     +++ VES  L  + +LQ   K   A+   V DIL    +FD CSF++ PR  N +T  +AK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

V4MDM1 RNase H domain-containing protein8.1e-0437.8Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        PL AE LA+   L Q    + +KI+VES+SLQ I  +   S       + + DIL  +  F++ +F ++PR LN +  SLAK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0535.37Show/hide
Query:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK
        PL AE +A+   L+ AQ++   K+ + S+S Q I+ +  +S S     + + DIL  +  F   SF++VPR+ NR    LAK
Subjt:  PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCACTTTCAGCCGAGCTTCTCGCGATTCTACAAGGATTAGAACAGGCTCAAACTCTTAATTGCAAGAAAATTATGGTGGAATCGAATTCCCTTCAAGCAATTTCTCTTCT
TCAACAAAAGTCGAAATCTTTGGCAGCCTCAAACGTCTGGGTCCACGACATCTTGCAGCCAGCTGGTCTTTTTGATTCTTGCTCCTTCAATTATGTCCCTCGTGCTTTAA
ACCGCTCAACACATTCTTTGGCTAAA
mRNA sequenceShow/hide mRNA sequence
CCACTTTCAGCCGAGCTTCTCGCGATTCTACAAGGATTAGAACAGGCTCAAACTCTTAATTGCAAGAAAATTATGGTGGAATCGAATTCCCTTCAAGCAATTTCTCTTCT
TCAACAAAAGTCGAAATCTTTGGCAGCCTCAAACGTCTGGGTCCACGACATCTTGCAGCCAGCTGGTCTTTTTGATTCTTGCTCCTTCAATTATGTCCCTCGTGCTTTAA
ACCGCTCAACACATTCTTTGGCTAAA
Protein sequenceShow/hide protein sequence
PLSAELLAILQGLEQAQTLNCKKIMVESNSLQAISLLQQKSKSLAASNVWVHDILQPAGLFDSCSFNYVPRALNRSTHSLAK