CuGenDBv2

Gene ID	MS017366
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U2 small nuclear ribonucleoprotein auxiliary factor-like protein
Genome location	scaffold322:221317..229615
RNA-Seq Expression	MS017366
Synteny	MS017366
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605331.1 hypothetical protein SDJN03_02648, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-86

74.89

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        ME+ DF  IFGEPK+EW+N GSL V  F+F+VHTPNPSHLRFCVTDFHSNTWE+ +S  QL DMRD+IGIGG MSEF++Y+ITSLK GDV+LRLE  S  
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD
        + A  AKL +QKSKGMPVFS+ LTKL D AASEA+A+LS GLFNSLK  ECSL+KEQE SLQLT MIS+EKEKYESIQS LGQYTKKQKLQNMNASNSPD
Subjt:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD

Query:  KSV-HNIGSTKVANRVVPAHRRS
        KS+ H IGSTK  NR VPAHRR+
Subjt:  KSV-HNIGSTKVANRVVPAHRRS

XP_022148950.1 uncharacterized protein LOC111017494 isoform X1 [Momordica charantia]

3.0e-116

96.46

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVH PNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGH GK
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
        E    VATHAKLSSQKSKGMPVFSIPLTKL+DSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
Subjt:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS

Query:  NSPDKSVHNIGSTKVANRVVPAHRRS
        NSPDKSVHNIGSTKVANRVVPAHRR+
Subjt:  NSPDKSVHNIGSTKVANRVVPAHRRS

XP_022148951.1 uncharacterized protein LOC111017494 isoform X2 [Momordica charantia]

3.0e-116

96.46

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVH PNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGH GK
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
        E    VATHAKLSSQKSKGMPVFSIPLTKL+DSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
Subjt:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS

Query:  NSPDKSVHNIGSTKVANRVVPAHRRS
        NSPDKSVHNIGSTKVANRVVPAHRR+
Subjt:  NSPDKSVHNIGSTKVANRVVPAHRRS

XP_022947758.1 uncharacterized protein LOC111451522 isoform X1 [Cucurbita moschata]

4.3e-86

74.55

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        ME+ DF  IFGEPK+EW+N GSL V  F+F+VHTPNPSHLRFCVTDFHSNTWE+ +S  QL DMRD+IGIGG MSEF++Y+ITSLK GDV+LRLE  S  
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD
        + A  AKL +QKSKGMPVFS+ LTKL D AASEA+A+LS GLFNSLK  ECSL+KEQE SLQLT MIS+EKEKYESIQS LGQYTKKQKLQNMNASNSPD
Subjt:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD

Query:  KSV--HNIGSTKVANRVVPAHRRS
        KS+  H IGSTK  NR VPAHRR+
Subjt:  KSV--HNIGSTKVANRVVPAHRRS

XP_022947759.1 uncharacterized protein LOC111451522 isoform X2 [Cucurbita moschata]

4.3e-86

74.55

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        ME+ DF  IFGEPK+EW+N GSL V  F+F+VHTPNPSHLRFCVTDFHSNTWE+ +S  QL DMRD+IGIGG MSEF++Y+ITSLK GDV+LRLE  S  
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD
        + A  AKL +QKSKGMPVFS+ LTKL D AASEA+A+LS GLFNSLK  ECSL+KEQE SLQLT MIS+EKEKYESIQS LGQYTKKQKLQNMNASNSPD
Subjt:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD

Query:  KSV--HNIGSTKVANRVVPAHRRS
        KS+  H IGSTK  NR VPAHRR+
Subjt:  KSV--HNIGSTKVANRVVPAHRRS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D4D2 uncharacterized protein LOC111017494 isoform X1

1.5e-116

96.46

Show/hide

Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVH PNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGH GK
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
        E    VATHAKLSSQKSKGMPVFSIPLTKL+DSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
Subjt:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS

Query:  NSPDKSVHNIGSTKVANRVVPAHRRS
        NSPDKSVHNIGSTKVANRVVPAHRR+
Subjt:  NSPDKSVHNIGSTKVANRVVPAHRRS

A0A6J1D6X2 uncharacterized protein LOC111017494 isoform X2

1.5e-116

96.46

Show/hide

Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVH PNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGH GK
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
        E    VATHAKLSSQKSKGMPVFSIPLTKL+DSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS
Subjt:  E----VATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNAS

Query:  NSPDKSVHNIGSTKVANRVVPAHRRS
        NSPDKSVHNIGSTKVANRVVPAHRR+
Subjt:  NSPDKSVHNIGSTKVANRVVPAHRRS

A0A6J1G7H1 uncharacterized protein LOC111451522 isoform X1

2.1e-86

74.55

Show/hide

Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        ME+ DF  IFGEPK+EW+N GSL V  F+F+VHTPNPSHLRFCVTDFHSNTWE+ +S  QL DMRD+IGIGG MSEF++Y+ITSLK GDV+LRLE  S  
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD
        + A  AKL +QKSKGMPVFS+ LTKL D AASEA+A+LS GLFNSLK  ECSL+KEQE SLQLT MIS+EKEKYESIQS LGQYTKKQKLQNMNASNSPD
Subjt:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD

Query:  KSV--HNIGSTKVANRVVPAHRRS
        KS+  H IGSTK  NR VPAHRR+
Subjt:  KSV--HNIGSTKVANRVVPAHRRS

A0A6J1G7U7 uncharacterized protein LOC111451522 isoform X2

2.1e-86

74.55

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        ME+ DF  IFGEPK+EW+N GSL V  F+F+VHTPNPSHLRFCVTDFHSNTWE+ +S  QL DMRD+IGIGG MSEF++Y+ITSLK GDV+LRLE  S  
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD
        + A  AKL +QKSKGMPVFS+ LTKL D AASEA+A+LS GLFNSLK  ECSL+KEQE SLQLT MIS+EKEKYESIQS LGQYTKKQKLQNMNASNSPD
Subjt:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD

Query:  KSV--HNIGSTKVANRVVPAHRRS
        KS+  H IGSTK  NR VPAHRR+
Subjt:  KSV--HNIGSTKVANRVVPAHRRS

A0A6J1L4C1 uncharacterized protein LOC111499771 isoform X2

3.3e-84

73.21

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Query:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK
        ME+ DF  IFGEPK+EW+N  SL    F+F+VHTPNPSHLRFCVTDFHSNTWE+ +S  QL DMRD+IGIGG MSEF++Y+ITSLK GDV+LRLE  S  
Subjt:  MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGK

Query:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD
        + A  AKL +QKSKGMPVFS+ LTKL D AASEA+A+LS GLFNSLK  ECSL+KEQE SLQLT MIS+EKEKYESIQS LGQYTKKQKLQNMNASNSPD
Subjt:  EVATHAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPD

Query:  KSV--HNIGSTKVANRVVPAHRRS
        KS+  H IG TK  NR VPAHRR+
Subjt:  KSV--HNIGSTKVANRVVPAHRRS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G64010.1 unknown protein

2.2e-32

38.74

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Query:  QDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGKEVA
        + F PIFGE   E  + GS  +RR +F+V+  +  +L   VTDF S  W  I SV QL DMRD +GIGG  SEF++Y + SLK  +VKL L   S     
Subjt:  QDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGKEVA

Query:  THAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKL---QNMNASNSPD
          A+L SQK+KGMP  ++PLTK+++S+ASEA+A+LS  LF + K  +       +  +  +   + EK+K ++  + L +Y++K  +      N  +SP 
Subjt:  THAKLSSQKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKL---QNMNASNSPD

Query:  KSVHNIGSTKVANRVVPAHRRS
               +TK   + VPAHRR+
Subjt:  KSVHNIGSTKVANRVVPAHRRS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGCTTCAAGATTTCCCACCCATTTTTGGAGAACCCAAATTGGAGTGGTTAAACAGCGGTTCGCTTCCTGTGCGCCGATTTGTGTTCTATGTTCACACTCCCAATCC
TTCGCACCTCAGATTTTGTGTTACCGATTTCCATTCCAACACTTGGGAAGCCATCAGATCGGTTCCGCAGCTTCAGGACATGAGGGATGACATTGGAATTGGAGGGGATA
TGTCCGAGTTTCTTAACTATCTCATTACTTCCCTGAAACTTGGAGATGTAAAGCTTCGTCTTGAAGGACACTCGGGGAAGGAAGTTGCAACACATGCCAAATTAAGTTCC
CAGAAATCAAAAGGAATGCCTGTTTTTTCTATTCCTCTCACAAAACTCATGGACTCAGCTGCTTCTGAAGCTGTGGCAAGTCTGTCCTTTGGGCTCTTTAACTCATTGAA
AGACATGGAATGTTCACTTATAAAAGAGCAAGAGCACTCCCTTCAGTTGACAAACATGATATCATCAGAAAAGGAAAAATACGAAAGTATTCAGAGCCATCTCGGGCAAT
ATACAAAGAAACAGAAGTTGCAAAATATGAATGCCTCAAATTCTCCAGATAAGTCTGTTCATAATATTGGCTCGACAAAAGTAGCCAATCGTGTAGTGCCAGCGCATCGC
AGGTCG

mRNA sequence

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Protein sequence

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MELQDFPPIFGEPKLEWLNSGSLPVRRFVFYVHTPNPSHLRFCVTDFHSNTWEAIRSVPQLQDMRDDIGIGGDMSEFLNYLITSLKLGDVKLRLEGHSGKEVATHAKLSS
QKSKGMPVFSIPLTKLMDSAASEAVASLSFGLFNSLKDMECSLIKEQEHSLQLTNMISSEKEKYESIQSHLGQYTKKQKLQNMNASNSPDKSVHNIGSTKVANRVVPAHR
RS

MS017366 (gene) of Bitter gourd (TR) v1 genome