; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017372 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017372
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold322:412965..413423
RNA-Seq ExpressionMS017372
SyntenyMS017372
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2623078.1 ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]2.2e-2540.38Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P  VI RLEKL+K   W+G E+    + + W++       GG   GNL  +N+ALLAKW W F +E NSLW  VI  KY L  + W  +P  R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
        + PW +I       L+CC+       FK GNGE+++ W+D W+   PL   FPR+F
Subjt:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

KAB2624931.1 ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]3.4e-2641.03Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P +VI RLEKLLK   W+G E+    + + W+V       GG   GNL  +N+ALLAKW W F +E NS W  VI  KYRL  + W  +P  R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
        + PW +I       L+CC+       F+ GN +++RFWKD W+   PL   +PR+F
Subjt:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

TQD93576.1 hypothetical protein C1H46_020784 [Malus baccata]2.9e-2540.94Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P  VI RLEKL+K   W+G E+    + + W++       GG   GNL  +N+ALLAKW W F +E +SLW  VI  KY L  + W   P  R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
        + PW +I    Q   +   F+ GNGE++RFW+D W+   PL   FPR+F
Subjt:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]6.5e-2539.74Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P  VI RLEKL+K   W+G E+    + + W++       GG   GNL  + +ALLAKW W F +E NSLW  VI  KY L  + W  +P  R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
        + PW +I       L+CC+       F+ GNGE++RFW+D W+   PL   +PR+F
Subjt:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

XP_022151711.1 uncharacterized protein LOC111019624 [Momordica charantia]6.5e-2536.91Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +F+ P +VI+ LEK+++   W+G E+ GG + ++WK  + PL  GG   GNL  +N+A LAKW W F  E ++LWR +I  KY   P +W      +   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
          PW  I  C            G+G    FW+D W+ N PLS+ FPR++
Subjt:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

TrEMBL top hitse value%identityAlignment
A0A5N5H648 Ribonuclease H protein1.1e-2540.38Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P  VI RLEKL+K   W+G E+    + + W++       GG   GNL  +N+ALLAKW W F +E NSLW  VI  KY L  + W  +P  R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
        + PW +I       L+CC+       FK GNGE+++ W+D W+   PL   FPR+F
Subjt:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

A0A5N5HFG1 Ribonuclease H protein1.7e-2641.03Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P +VI RLEKLLK   W+G E+    + + W+V       GG   GNL  +N+ALLAKW W F +E NS W  VI  KYRL  + W  +P  R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF
        + PW +I       L+CC+       F+ GN +++RFWKD W+   PL   +PR+F
Subjt:  KGPWANI-------LKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVF

A0A803P8A0 Uncharacterized protein2.8e-2640.41Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P+ V+K LEK+++  FW+GG+  GG + ++W     P + GG   G LE +NK LL KW W F  E NSLW  VI  +Y    + W      R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFP
        +GPW +I     E G    FK GNG  IRFW+D W+    L   FP
Subjt:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFP

A0A803PW65 Uncharacterized protein1.1e-2539.73Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P+ V+K +EK+++  FW+GG+  GG + ++W     P S GG   G LE +NK LL KW W +  E NSLW  VI  +Y    + W      R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFP
        +GPW +I     E G    FK GNG  IRFW+D W+    L   FP
Subjt:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFP

A0A803QEA6 Uncharacterized protein5.7e-2739.86Show/hide
Query:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY
        +FK P+ V+K LEK++++ FW+GG+  GG + ++W     P + GG   G L+ +NK LL KW W F  E NSLW  VI  +Y    + W      R   
Subjt:  IFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQY

Query:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRV
        +GPW +I     E G    FK GNGE+IRFW+D W+    L   FP +
Subjt:  KGPWANILKCCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAATATTCAAATGCCCAAGACAAGTGATCAAAAGGCTGGAAAAATTATTAAAAAAACTTTTTTGGAAAGGTGGAGAACAGAAGGGAGGCCCCAACCCAATATCATGGAA
AGTTACGACTTTACCTCTAAGCATGGGAGGAGCTCGGACAGGTAACCTTGAGGCCAAGAATAAAGCTTTGTTGGCCAAATGGGGATGGGGTTTCCAAAGGGAGGAGAACT
CTTTATGGAGAAACGTTATTGCTAGAAAGTACAGACTCCTTCCTCACGAGTGGTGGCCTCACCCCAAAGAGAGACATCAATACAAAGGGCCATGGGCTAACATTCTAAAA
TGTTGTCAGGAAGCTGGCTATTATTATAATTTCAAGGCGGGCAATGGGGAAAAGATCAGGTTTTGGAAGGATCCATGGATGGCAAATTGTCCACTTTCAATTACCTTCCC
AAGAGTCTTTAAGGTGGCA
mRNA sequenceShow/hide mRNA sequence
TTAATATTCAAATGCCCAAGACAAGTGATCAAAAGGCTGGAAAAATTATTAAAAAAACTTTTTTGGAAAGGTGGAGAACAGAAGGGAGGCCCCAACCCAATATCATGGAA
AGTTACGACTTTACCTCTAAGCATGGGAGGAGCTCGGACAGGTAACCTTGAGGCCAAGAATAAAGCTTTGTTGGCCAAATGGGGATGGGGTTTCCAAAGGGAGGAGAACT
CTTTATGGAGAAACGTTATTGCTAGAAAGTACAGACTCCTTCCTCACGAGTGGTGGCCTCACCCCAAAGAGAGACATCAATACAAAGGGCCATGGGCTAACATTCTAAAA
TGTTGTCAGGAAGCTGGCTATTATTATAATTTCAAGGCGGGCAATGGGGAAAAGATCAGGTTTTGGAAGGATCCATGGATGGCAAATTGTCCACTTTCAATTACCTTCCC
AAGAGTCTTTAAGGTGGCA
Protein sequenceShow/hide protein sequence
LIFKCPRQVIKRLEKLLKKLFWKGGEQKGGPNPISWKVTTLPLSMGGARTGNLEAKNKALLAKWGWGFQREENSLWRNVIARKYRLLPHEWWPHPKERHQYKGPWANILK
CCQEAGYYYNFKAGNGEKIRFWKDPWMANCPLSITFPRVFKVA