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MS017373 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017373
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold322:413677..413856
RNA-Seq ExpressionMS017373
SyntenyMS017373
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein2.8e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein2.8e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein2.8e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein2.8e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein2.8e-0646.43Show/hide
Query:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
        PKK K F+W      I T +RLQ    NW +S NWC +C  ++E+  HLF  CPYS
Subjt:  PKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCCTAAAAAAGTAAAGGTTTTCTTGTGGATTTTTGCAAAAGAACGAATTCAAACGTGCAATAGACTACAGATAAACTGCTCGAACTGGTATATCTCCTCGAATTGGTG
TTGTCTATGCTATTCGAATGAGGAAAATCAAATGCACCTCTTTTTCACATGCCCTTACAGCACTTACAGT
mRNA sequenceShow/hide mRNA sequence
ATCCCTAAAAAAGTAAAGGTTTTCTTGTGGATTTTTGCAAAAGAACGAATTCAAACGTGCAATAGACTACAGATAAACTGCTCGAACTGGTATATCTCCTCGAATTGGTG
TTGTCTATGCTATTCGAATGAGGAAAATCAAATGCACCTCTTTTTCACATGCCCTTACAGCACTTACAGT
Protein sequenceShow/hide protein sequence
IPKKVKVFLWIFAKERIQTCNRLQINCSNWYISSNWCCLCYSNEENQMHLFFTCPYSTYS