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MS017378 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017378
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase)
Genome locationscaffold322:471286..471516
RNA-Seq ExpressionMS017378
SyntenyMS017378
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU48919.1 hypothetical protein TSUD_301740 [Trifolium subterraneum]1.2e-0847.22Show/hide
Query:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        +K+ILN YE+A GQ INY KS+   S+NT   +   +   L VS T   GRYLG+PS + RNK  +  Y+KD
Subjt:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

MCH81523.1 RNA-directed DNA polymerase (Reverse transcriptase) [Trifolium medium]9.5e-0944.74Show/hide
Query:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        + Q +K+ILN YE+A GQ INY KS+   S+NT   +  +V E L V+     G+YLG+PS + RNK  +  Y+KD
Subjt:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

MCH87349.1 RNA-directed DNA polymerase (Reverse transcriptase) [Trifolium medium]1.5e-0947.22Show/hide
Query:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        +K+ILN YE+A GQ INY KS+   S+NT+ ++ + +   L VS T  +GRYLG+PS + RNK  +  Y+KD
Subjt:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

PNX96363.1 ribonuclease H, partial [Trifolium pratense]2.5e-0944.74Show/hide
Query:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        + Q +K+ILNVYE+A GQ INY KS+   S+NT   + + + + L V      GRYLG+PS + RNK  +  Y+KD
Subjt:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]4.9e-1354.55Show/hide
Query:  DCQSIKRILNVYERA-LGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        +C+SIK IL  YE+A  GQ IN +KS F+VSKNTK  ++ +++++L V++T  LG+YLGLPSQ  RNK +V N IKD
Subjt:  DCQSIKRILNVYERA-LGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

TrEMBL top hitse value%identityAlignment
A0A2K3MZZ2 Ribonuclease H (Fragment)1.2e-0944.74Show/hide
Query:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        + Q +K+ILNVYE+A GQ INY KS+   S+NT   + + + + L V      GRYLG+PS + RNK  +  Y+KD
Subjt:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

A0A2Z6PPM7 zf-RVT domain-containing protein6.0e-0947.22Show/hide
Query:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        +K+ILN YE+A GQ INY KS+   S+NT   +   +   L VS T   GRYLG+PS + RNK  +  Y+KD
Subjt:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

A0A392M3C8 RNA-directed DNA polymerase (Reverse transcriptase)4.6e-0944.74Show/hide
Query:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        + Q +K+ILN YE+A GQ INY KS+   S+NT   +  +V E L V+     G+YLG+PS + RNK  +  Y+KD
Subjt:  DCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

A0A392MJX1 RNA-directed DNA polymerase (Reverse transcriptase)7.1e-1047.22Show/hide
Query:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        +K+ILN YE+A GQ INY KS+   S+NT+ ++ + +   L VS T  +GRYLG+PS + RNK  +  Y+KD
Subjt:  IKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

A0A6J1DUG8 uncharacterized protein LOC1110241352.4e-1354.55Show/hide
Query:  DCQSIKRILNVYERA-LGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD
        +C+SIK IL  YE+A  GQ IN +KS F+VSKNTK  ++ +++++L V++T  LG+YLGLPSQ  RNK +V N IKD
Subjt:  DCQSIKRILNVYERA-LGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGGATTGCCAATCAATAAAGCGAATTCTCAATGTATATGAACGTGCTTTAGGACAAACTATTAATTATGAGAAGTCTCAATTTATGGTTAGCAAGAATACCAAGACCGC
GTTAATCGACCTTGTTAAGGAGAAACTCAACGTGTCCTATACCAGTCAATTAGGGCGTTATCTCGGTCTACCCTCCCAGCTCTCTAGAAATAAATGCAGAGTCATCAACT
ATATCAAGGAT
mRNA sequenceShow/hide mRNA sequence
TCGGATTGCCAATCAATAAAGCGAATTCTCAATGTATATGAACGTGCTTTAGGACAAACTATTAATTATGAGAAGTCTCAATTTATGGTTAGCAAGAATACCAAGACCGC
GTTAATCGACCTTGTTAAGGAGAAACTCAACGTGTCCTATACCAGTCAATTAGGGCGTTATCTCGGTCTACCCTCCCAGCTCTCTAGAAATAAATGCAGAGTCATCAACT
ATATCAAGGAT
Protein sequenceShow/hide protein sequence
SDCQSIKRILNVYERALGQTINYEKSQFMVSKNTKTALIDLVKEKLNVSYTSQLGRYLGLPSQLSRNKCRVINYIKD