; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017430 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017430
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationscaffold435:5992..6444
RNA-Seq ExpressionMS017430
SyntenyMS017430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]4.5e-6384.21Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRR ALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA

Query:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
          N+ PVC+E EDGE+G TGW PGSPRP WTGFRYKYLLRKTWRP+LAGIPE
Subjt:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]9.1e-6484.87Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA

Query:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
          N+ PVC+E EDGE+G TGW PGSPRP WTGFRYKYLLRKTWRP+LAGIPE
Subjt:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

XP_022152317.1 uncharacterized protein LOC111020064 [Momordica charantia]5.3e-80100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATAS
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATAS
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATAS

Query:  PNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
        PNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
Subjt:  PNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]2.9e-6283.55Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKR DH DL+RSNTLKDLFVSSPPYD ++ EI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA

Query:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
          N+ PVC+E EDGE+G TGW PGSPRP WTGFRYKYLLRKTWRP+LAGIPE
Subjt:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

XP_038875200.1 uncharacterized protein LOC120067717 [Benincasa hispida]7.7e-6383.55Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSP RRALP+KKR DH +L+RSNTLKDLFVSSPPY   DG+I E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA

Query:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
        + +   VCKEKEDGEVGS GW PGSPRP WTGFRYKYLLRKTWRPVLAGIPE
Subjt:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein3.3e-5979.22Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR--DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATAT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRR+LP+ K   D   L+RSNTLKDLFVSSPPY G D ++ + A TA 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR--DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATAT

Query:  ASPNLIPVC-KEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
         + N+ PVC KEKE+G VGS GW PGSPRP WTGFRYKYLLRKTWRPVL GIPE
Subjt:  ASPNLIPVC-KEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

A0A5D3BMD8 Uncharacterized protein2.8e-5880.13Show/hide
Query:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RALPDKKR--DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAAT
        MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR RALP+ K+  DH  L+RSNTLKDLFVSSPPY G D ++ E A T
Subjt:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRR-RALPDKKR--DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAAT

Query:  ATASPNLIPVC-KEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
        A  + N  PVC KEKE+G VGS GW PGSPRP WTGFRYKYLLRKTWRPVL GIPE
Subjt:  ATASPNLIPVC-KEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1DFV6 uncharacterized protein LOC1110200642.6e-80100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATAS
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATAS
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATAS

Query:  PNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
        PNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
Subjt:  PNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633734.1e-6282.89Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA

Query:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
          N+ PVC+E EDGE+G T W PGSPRP WTGFR+KYLLRKTWRP+LA IPE
Subjt:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704933.0e-6082.24Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS     RRRALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKR-DHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATA

Query:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
          N+ PVC+E EDGE+G TGW PGSPRP WTGFRYKYLLRKTWRP+LAGIPE
Subjt:  SPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown1.9e-1443.21Show/hide
Query:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGR-RSPRRRALPD--KKRDHTDLARSN-TLKDLFVSSPPYD--GNDGEIKEAAA
        SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R P  +   D  KK D     RS+  L DLFVSSPP++  G  G   +   
Subjt:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGR-RSPRRRALPD--KKRDHTDLARSN-TLKDLFVSSPPYD--GNDGEIKEAAA

Query:  TATASPNLIPVCKEKEDGEVGS------TGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
                +PV     +   G        G+  GS RP  +      LLR++WRPVL  IPE
Subjt:  TATASPNLIPVCKEKEDGEVGS------TGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

AT1G68430.1 unknown protein1.1e-1441.61Show/hide
Query:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGND-------GEI
        MA+L +FK L T CGV AQSPT   SPRTSPLV LRR+KTTL+MLL+  S     RR   P     H D+A    LKDLFVSS   +          G+ 
Subjt:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGND-------GEI

Query:  KEAAATATASPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
        KE    A A+        + E  +            P W GF  K LL++ WRP L  I E
Subjt:  KEAAATATASPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related4.0e-0934.12Show/hide
Query:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRR----------SPRRRALPDKKRDHTDLARSNTLKDLFVS--SPPYD
        ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  ++S  R          SP        K+     A    L++L V+  SPPY 
Subjt:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRR----------SPRRRALPDKKRDHTDLARSNTLKDLFVS--SPPYD

Query:  GN---DGEIKEAAATATASPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE
        G    DG  +E +  +  +       +E      GS+G        +   FR + +LRK WRPVL  IPE
Subjt:  GN---DGEIKEAAATATASPNLIPVCKEKEDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTGAAATTCAAGCTCCTCCCGACTCACTGCGGCGTCGCTCAGAGTCCCACGTTGAGCCCTAGAACGAGCCCTCTCGTCCACCTCCGTCGCCGGAAAAC
CACTCTGCGGATGCTTCTCACTCGGAATTCCGGCCGGAGATCCCCTCGCCGCCGTGCCTTGCCCGACAAGAAGAGAGACCACACGGATTTGGCGCGGAGCAACACGTTGA
AGGACTTGTTCGTCTCGTCGCCGCCGTACGACGGAAACGACGGCGAGATTAAGGAGGCGGCGGCGACGGCGACGGCGAGCCCGAACCTGATTCCGGTTTGCAAGGAGAAG
GAAGATGGTGAGGTTGGATCGACCGGTTGGAAACCGGGTTCTCCCAGACCGGCTTGGACCGGTTTCCGATACAAGTACTTGCTCCGGAAAACGTGGCGGCCGGTGCTCGC
CGGCATCCCCGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTGAAATTCAAGCTCCTCCCGACTCACTGCGGCGTCGCTCAGAGTCCCACGTTGAGCCCTAGAACGAGCCCTCTCGTCCACCTCCGTCGCCGGAAAAC
CACTCTGCGGATGCTTCTCACTCGGAATTCCGGCCGGAGATCCCCTCGCCGCCGTGCCTTGCCCGACAAGAAGAGAGACCACACGGATTTGGCGCGGAGCAACACGTTGA
AGGACTTGTTCGTCTCGTCGCCGCCGTACGACGGAAACGACGGCGAGATTAAGGAGGCGGCGGCGACGGCGACGGCGAGCCCGAACCTGATTCCGGTTTGCAAGGAGAAG
GAAGATGGTGAGGTTGGATCGACCGGTTGGAAACCGGGTTCTCCCAGACCGGCTTGGACCGGTTTCCGATACAAGTACTTGCTCCGGAAAACGTGGCGGCCGGTGCTCGC
CGGCATCCCCGAG
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDHTDLARSNTLKDLFVSSPPYDGNDGEIKEAAATATASPNLIPVCKEK
EDGEVGSTGWKPGSPRPAWTGFRYKYLLRKTWRPVLAGIPE