; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017442 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017442
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Genome locationscaffold435:203469..203719
RNA-Seq ExpressionMS017442
SyntenyMS017442
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QRI60548.1 hypothetical chloroplast RF21 [Hardenbergia violacea]9.4e-2068.18Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H +FF DEEMS+GLLTSQ DL   +Y HWFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

YP_009439847.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum]9.4e-2070.45Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIKN QEKHF LLIH QRWLRTTSSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

YP_009468904.1 hypothetical chloroplast RF2 [Gynostemma compressum]9.4e-2070.45Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIKN QEKHF LLIH QRWLRTTSSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

YP_009772211.1 hypothetical chloroplast RF21 [Zornia diphylla]9.4e-2069.32Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  PTDPLFFLFKDQ       H EFF DEEMS+GLLTSQ DL   +Y  WFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

YP_009868859.1 Ycf2 [Spatholobus pulcher]7.2e-2069.32Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H +FFTDEEM +GLLTSQ DL   LY HWFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

TrEMBL top hitse value%identityAlignment
A0A191T4A7 Protein Ycf24.6e-2070.45Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIKN QEKHF LLIH QRWLRTTSSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

A0A286QM47 Protein Ycf24.6e-2070.45Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIKN QEKHF LLIH QRWLRTTSSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

A0A291IAJ3 Protein Ycf24.6e-2070.45Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIKN QEKHF LLIH QRWLRTTSSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

A0A291IAS5 Protein Ycf24.6e-2070.45Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIKN QEKHF LLIH QRWLRTTSSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

A0A6M8PWJ8 Protein Ycf23.5e-2069.32Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H +FFTDEEM +GLLTSQ DL   LY HWFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

SwissProt top hitse value%identityAlignment
A4GYV4 Protein Ycf21.8e-2168.18Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

B1A978 Protein Ycf21.4e-2168.18Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

Q14F97 Protein Ycf21.8e-2168.18Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

Q2PMM5 Protein Ycf21.4e-2167.05Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H +FFTDEEMS+ LLTSQ DL   +Y HWFIKN QEKHF+LLIH QRWLR  SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

Q49KT6 Protein Ycf21.0e-2168.18Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIKN QEKHF+LLIH QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIKNRQEKHFKLLIH-QRWLRTTSSLSNGFF

Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core8.2e-2267.05Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLI-HQRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIKN QEKHF+LLI  QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLI-HQRWLRTTSSLSNGFF

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core8.2e-2267.05Show/hide
Query:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLI-HQRWLRTTSSLSNGFF
        FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIKN QEKHF+LLI  QRWLRT SSLSNGFF
Subjt:  FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIKNRQEKHFKLLI-HQRWLRTTSSLSNGFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACT
TACTTCCCAAATAGATCTGCTACATCTATATCATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCACCAGAGATGGCTTAGAACCACTAGTTCAT
TATCTAATGGATTTTTC
mRNA sequenceShow/hide mRNA sequence
TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACT
TACTTCCCAAATAGATCTGCTACATCTATATCATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCACCAGAGATGGCTTAGAACCACTAGTTCAT
TATCTAATGGATTTTTC
Protein sequenceShow/hide protein sequence
FRSFNRILTPTDPLFFLFKDQYHGEFFTDEEMSKGLLTSQIDLLHLYHWFIKNRQEKHFKLLIHQRWLRTTSSLSNGFF