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MS017461 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017461
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold435:618173..618334
RNA-Seq ExpressionMS017461
SyntenyMS017461
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6340009.1 unnamed protein product [Miscanthus lutarioriparius]1.3e-0476.67Show/hide
Query:  DLGAGK-QVWCPIQYEKLPDFCYSCGRIGH
        DLGA K + WCPI YE LPDFCY CGRIGH
Subjt:  DLGAGK-QVWCPIQYEKLPDFCYSCGRIGH

MBA0784882.1 hypothetical protein [Gossypium trilobum]2.2e-0452.94Show/hide
Query:  LDLGAGKQVWCPIQYEKLPDFCYSCGRIGHSLRQ
        + +G G +VW P +YEKLP FC+ CGR+GH L++
Subjt:  LDLGAGKQVWCPIQYEKLPDFCYSCGRIGHSLRQ

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.1e-0667.65Show/hide
Query:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRS
        GK +WCP++YEKLPDFCY CG+IGHS R+   RS
Subjt:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRS

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.8e-0666.67Show/hide
Query:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHR
        GK +WCP++YEKLPDFCY CGR+GHS R++  R
Subjt:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHR

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.4e-0666.67Show/hide
Query:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQY
        GK +WCP++YE+LPDFCY CG +GHS+R+Y
Subjt:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQY

TrEMBL top hitse value%identityAlignment
A0A6J1D765 uncharacterized protein LOC1110179025.2e-0767.65Show/hide
Query:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRS
        GK +WCP++YEKLPDFCY CG+IGHS R+   RS
Subjt:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRS

A0A6J1DAR4 uncharacterized protein LOC1110189548.8e-0766.67Show/hide
Query:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHR
        GK +WCP++YEKLPDFCY CGR+GHS R++  R
Subjt:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHR

A0A6J1DVS4 uncharacterized protein LOC1110235556.7e-0766.67Show/hide
Query:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQY
        GK +WCP++YE+LPDFCY CG +GHS+R+Y
Subjt:  GKQVWCPIQYEKLPDFCYSCGRIGHSLRQY

A0A7J6F623 CCHC-type domain-containing protein1.1e-0444.68Show/hide
Query:  AGKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRSHPLGYNMENGCA
        +G ++W P +YE+LP  C+SCGRIGH  R      HP+  +  NGC+
Subjt:  AGKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRSHPLGYNMENGCA

A0A7J9FHT9 CCHC-type domain-containing protein (Fragment)1.1e-0452.94Show/hide
Query:  LDLGAGKQVWCPIQYEKLPDFCYSCGRIGHSLRQ
        + +G G +VW P +YEKLP FC+ CGR+GH L++
Subjt:  LDLGAGKQVWCPIQYEKLPDFCYSCGRIGHSLRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGATTTGGGTGCAGGTAAGCAGGTGTGGTGTCCCATTCAGTATGAAAAGCTTCCCGACTTCTGTTACTCTTGTGGGCGGATTGGTCACTCCCTTCGGCAGTACCACCA
TCGGAGTCATCCGCTCGGTTACAATATGGAGAACGGCTGCGCGCGTCAGTTT
mRNA sequenceShow/hide mRNA sequence
CTTGATTTGGGTGCAGGTAAGCAGGTGTGGTGTCCCATTCAGTATGAAAAGCTTCCCGACTTCTGTTACTCTTGTGGGCGGATTGGTCACTCCCTTCGGCAGTACCACCA
TCGGAGTCATCCGCTCGGTTACAATATGGAGAACGGCTGCGCGCGTCAGTTT
Protein sequenceShow/hide protein sequence
LDLGAGKQVWCPIQYEKLPDFCYSCGRIGHSLRQYHHRSHPLGYNMENGCARQF