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MS017493 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017493
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationscaffold373:32349..32744
RNA-Seq ExpressionMS017493
SyntenyMS017493
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5228721.1 auxin-responsive protein [Salix suchowensis]6.4e-2953.33Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSG---PESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDV
        MDCLVLP   ++RR  +   GYR L + G    +SPVTVVVGKE++ FLVDPFVLE+ PFRVL++T +++S  +               R  ++V+LVDV
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSG---PESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDV

Query:  DAILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
        DAILFEH+LWLLYNDS SLF LN++EI++FY  DC
Subjt:  DAILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC

XP_017435172.1 PREDICTED: uncharacterized protein LOC108341980 [Vigna angularis]2.9e-2955.3Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRL-KDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDA
        M+CLVLP   ++    RR++GYR L K+    +P+TVVVGKEKRVFLV+PF+LE+NPFRVLM T KR+      + D+      R R +R RV+LVDVDA
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRL-KDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDA

Query:  ILFEHLLWLLYNDSPSLFNLNVEEILEFYALD
        ILFEH+LWL++ND  S FNLN+ +I++FYA D
Subjt:  ILFEHLLWLLYNDSPSLFNLNVEEILEFYALD

XP_021660020.1 uncharacterized protein LOC110649661 [Hevea brasiliensis]1.7e-2955.07Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPES---PVTVVVGKEKRVFLVDPFVLEQNPFRVLMQT----QKRESETHHSDDDDDEWRRRRTRRRRRRVI
        MDCLVLP   +++R     +GYR LKD G      PVTVVVGKEKR FLVDPFVLE++PFRVL++T      +E + HH+            +RR  RVI
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPES---PVTVVVGKEKRVFLVDPFVLEQNPFRVLMQT----QKRESETHHSDDDDDEWRRRRTRRRRRRVI

Query:  LVDVDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALD
         VDVDAILFEH+LWL+YND  SLF LN++EI++FYA D
Subjt:  LVDVDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALD

XP_022159663.1 uncharacterized protein LOC111026008 [Momordica charantia]2.4e-68100Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAI
        MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAI
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAI

Query:  LFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
        LFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
Subjt:  LFEHLLWLLYNDSPSLFNLNVEEILEFYALDC

XP_038888374.1 uncharacterized protein LOC120078224 [Benincasa hispida]2.9e-2956.74Show/hide
Query:  MDCLVLPCHAMKRRRPRRA---VGYRRLK-------DSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRR
        MDCLVLPC+ MKRRR R     +GY RL        D    S V VV GKEKR FLVDPFVLE+NPFR+L++           DD++DE        +R+
Subjt:  MDCLVLPCHAMKRRRPRRA---VGYRRLK-------DSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRR

Query:  RVILVDVDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALD
        RVI VDVD+ILFEHLLWL+YND  SLF LNVEEIL+FYA D
Subjt:  RVILVDVDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALD

TrEMBL top hitse value%identityAlignment
A0A0A0LK59 Uncharacterized protein4.0e-2955.48Show/hide
Query:  MDCLVLPCHAMKRRRPRRA----VGYRRLK-----------DSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRT
        M CLVLPC+ MKRRR RR+    +GY RL            D    S V VV GKE+R FLVDPFVLE+NPFR+L++           DDD+DE      
Subjt:  MDCLVLPCHAMKRRRPRRA----VGYRRLK-----------DSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRT

Query:  RRRRRRVILVDVDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALD
          +R+RVI VDVDAILFEHLLWL+YND  SLF LNVEEIL+FYA D
Subjt:  RRRRRRVILVDVDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALD

A0A0S3R586 Uncharacterized protein1.4e-2955.3Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRL-KDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDA
        M+CLVLP   ++    RR++GYR L K+    +P+TVVVGKEKRVFLV+PF+LE+NPFRVLM T KR+      + D+      R R +R RV+LVDVDA
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRL-KDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDA

Query:  ILFEHLLWLLYNDSPSLFNLNVEEILEFYALD
        ILFEH+LWL++ND  S FNLN+ +I++FYA D
Subjt:  ILFEHLLWLLYNDSPSLFNLNVEEILEFYALD

A0A6J1DZG4 uncharacterized protein LOC1110260081.2e-68100Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAI
        MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAI
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAI

Query:  LFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
        LFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
Subjt:  LFEHLLWLLYNDSPSLFNLNVEEILEFYALDC

A0A6N2JYM4 Uncharacterized protein4.0e-2953.33Show/hide
Query:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSG---PESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDV
        MDCLVLP   +KR   R  +GYR L + G    +SPVTV+VGKE++ FLVDPFVLE++PFRVL++T K++   + +             R  +RVI VDV
Subjt:  MDCLVLPCHAMKRRRPRRAVGYRRLKDSG---PESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDV

Query:  DAILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
        DAILFEH+LWL+YND  SLF LN++EI++FYA DC
Subjt:  DAILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC

A0A6N2KEJ0 Uncharacterized protein5.3e-2955.15Show/hide
Query:  MDCLVLPCHAMKRRR-PRRAVGYRRLKDSG---PESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVD
        MDCLVLP   M RRR  R   GYR L + G    +SPVTVVVGKE++ FLVDPFVLE+ PFRVL++T +++S  +               R  ++V+LVD
Subjt:  MDCLVLPCHAMKRRR-PRRAVGYRRLKDSG---PESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVD

Query:  VDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
        VDAILFEH+LWLLYNDS SLF LN++EI++FY  DC
Subjt:  VDAILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G17345.1 SAUR-like auxin-responsive protein family2.0e-0429.29Show/hide
Query:  VVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAILFEHLLWLLYN------DSPSLFNLNVEEILEFY
        V VGK +R +++   V+    F+ L+    R  E  H  +                 +LV  + +LFEHLLW+L N      D       +VEE+ EFY
Subjt:  VVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAILFEHLLWLLYN------DSPSLFNLNVEEILEFY

AT2G35290.1 unknown protein2.6e-2042.54Show/hide
Query:  MDCLVLPCHAMKR--RRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVD
        M CL+ P   ++R      R   YR L ++  +  + VVVGKEK+ F+V+P+VLE+ PFRVL+ + K  +             + R  R  R V L  VD
Subjt:  MDCLVLPCHAMKR--RRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVD

Query:  AILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC
        +ILFEHLLWLL ND+ +  +L+V EI+EFYA DC
Subjt:  AILFEHLLWLLYNDSPSLFNLNVEEILEFYALDC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCTTGGTCCTCCCCTGCCACGCCATGAAGAGACGCCGCCCACGCCGTGCCGTCGGTTACCGCCGCCTCAAAGACTCCGGGCCGGAGAGTCCGGTGACGGTGGT
GGTGGGGAAGGAAAAGAGGGTGTTTTTGGTGGACCCTTTTGTGTTGGAACAGAATCCATTCAGAGTTCTGATGCAGACCCAGAAGAGGGAAAGTGAAACCCATCATTCAG
ATGATGATGATGATGAGTGGAGAAGAAGAAGAACGAGAAGAAGAAGGAGGAGGGTGATTCTTGTTGATGTTGATGCCATTTTGTTCGAGCATTTGCTGTGGCTCTTGTAC
AACGATTCTCCTTCTTTGTTTAATCTCAATGTTGAGGAAATTCTTGAATTTTATGCTCTAGATTGT
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCTTGGTCCTCCCCTGCCACGCCATGAAGAGACGCCGCCCACGCCGTGCCGTCGGTTACCGCCGCCTCAAAGACTCCGGGCCGGAGAGTCCGGTGACGGTGGT
GGTGGGGAAGGAAAAGAGGGTGTTTTTGGTGGACCCTTTTGTGTTGGAACAGAATCCATTCAGAGTTCTGATGCAGACCCAGAAGAGGGAAAGTGAAACCCATCATTCAG
ATGATGATGATGATGAGTGGAGAAGAAGAAGAACGAGAAGAAGAAGGAGGAGGGTGATTCTTGTTGATGTTGATGCCATTTTGTTCGAGCATTTGCTGTGGCTCTTGTAC
AACGATTCTCCTTCTTTGTTTAATCTCAATGTTGAGGAAATTCTTGAATTTTATGCTCTAGATTGT
Protein sequenceShow/hide protein sequence
MDCLVLPCHAMKRRRPRRAVGYRRLKDSGPESPVTVVVGKEKRVFLVDPFVLEQNPFRVLMQTQKRESETHHSDDDDDEWRRRRTRRRRRRVILVDVDAILFEHLLWLLY
NDSPSLFNLNVEEILEFYALDC