CuGenDBv2

Gene ID	MS017496
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Microspore-specific promoter 2, putative
Genome location	scaffold373:48804..50666
RNA-Seq Expression	MS017496
Synteny	MS017496
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022159710.1 uncharacterized protein LOC111026052 [Momordica charantia]

1.4e-98

99.47

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Query:  MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEIS
        MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTST+ASVEIS
Subjt:  MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEIS

Query:  SSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        SSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
Subjt:  SSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

XP_022930921.1 uncharacterized protein LOC111437264 [Cucurbita moschata]

5.6e-71

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Query:  MEDDAK-LSHQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS
        MED AK L H PQH SSSSSMTL SRLD++D VMKYLE+KQ LER      +C+SLDVALKDTYFKGSLLDRVA+LEHRLFQLCL+MDSGSS+NPSS  S
Subjt:  MEDDAK-LSHQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS

Query:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEK--PQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        TQ S +ISSSS +PKQFCRGEPSSSYP FHYPSHGGTS+ISQ+QEK   QRH+QKKKQ SP K QLGKTRSG KDEGGSCKNVKKGI PPKW HLRMFGC
Subjt:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEK--PQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

XP_022996286.1 uncharacterized protein LOC111491560 [Cucurbita maxima]

5.1e-72

79.5

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Query:  MEDDAKLS-HQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS
        MED AKL  H PQH SSSSSMTL SRLD++D VMKYLE+KQ LER      +C+SLDVALKDTYFKGSLLDRVA+LEHRLFQLCL+MDSGSS+NPSS  S
Subjt:  MEDDAKLS-HQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS

Query:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKP--QRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        TQ S +ISSSS +PKQFCRGEPSSSYP FHYPSHGGTS+ISQ+QEKP  QRH+QKKKQ SP K QLGKTRSG KDEGGSCKNVKKGI PPKW HLRMFGC
Subjt:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKP--QRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

XP_023532991.1 uncharacterized protein LOC111795001 [Cucurbita pepo subsp. pepo]

6.7e-72

79.5

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Query:  MEDDAK-LSHQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS
        MED AK L H PQH SSSSSMTL SRLD++D VMKYLE+KQ LER      +C+SLDVALKDTYFKGSLLDRVA+LEHRLFQLCL+MDSGSS+NPSS  S
Subjt:  MEDDAK-LSHQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS

Query:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKP--QRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        TQ S +ISSSS +PKQFCRGEPSSSYP FHYPSHGGTS+ISQ+QEKP  QRH+QKKKQ SP K QLGKTRSG KDEGGSCKNVKKGI PPKW HLRMFGC
Subjt:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKP--QRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

XP_038888525.1 uncharacterized protein LOC120078343 [Benincasa hispida]

1.1e-71

76.7

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Query:  MEDD--AKLSHQPQH--SSSSSMTLLSRLDHLDFVMKYLERKQSL------------ERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSS
        MEDD  AKLSH PQH  SSSSSMTL SRLDHLDFVMK LE+KQ L            E+RC+SLDVALKDTYFKGSLLDRVA LE+RLFQLCL+MDSG+S
Subjt:  MEDD--AKLSHQPQH--SSSSSMTLLSRLDHLDFVMKYLERKQSL------------ERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSS

Query:  TNPSSFTSTQASVEISSSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQ-LGKTRSGSKDEGGSCKNVKKGIPPPKWPH
        +NPSS TS+Q SVEI SSSSPKQFCRG+PSSSYPTFHYP+HG TSQISQ+QEKPQR QQKK Q S SKGQ +GKTR+  KDE GSCKNVKKGIP  KWPH
Subjt:  TNPSSFTSTQASVEISSSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQ-LGKTRSGSKDEGGSCKNVKKGIPPPKWPH

Query:  LRMFGC
        LRMFGC
Subjt:  LRMFGC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LEC6 Uncharacterized protein

1.3e-57

66.82

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Query:  EDDAKLSHQPQH--SSSSSMTLLSRLDHLDFVMKYLERKQSLER-------------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTN
        +D+ KL   PQ   SSSSSMTL SRLDHLDFVMK LE+KQ LER             R +S+DVALKDTY KGSLLDRVAALEHRL QLCL+M+SGSS+N
Subjt:  EDDAKLSHQPQH--SSSSSMTLLSRLDHLDFVMKYLERKQSLER-------------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTN

Query:  PSSFTS---TQASVEISSSSSPKQFCRGE-PSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQ--LGKTRSGSKDEGGSCKNVKKGIPPP-
        PSS T+   T +S+EI+SSSSPK+FC G+  SSSYPTFHYP++G TSQ+SQ QEKPQR QQKKKQ S  KGQ  +GKT +  KDE GSCKNVKKG  P  
Subjt:  PSSFTS---TQASVEISSSSSPKQFCRGE-PSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQ--LGKTRSGSKDEGGSCKNVKKGIPPP-

Query:  -KWPHLRMFGC
         KWPHLRMFGC
Subjt:  -KWPHLRMFGC

A0A5D3E4W5 Uncharacterized protein

7.0e-43

71.05

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Query:  RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDS-GSSTNPSSFT-STQASVE-ISSSSSPKQFCRGEPS--SSYPTFHYPSHGGTSQISQVQEKP
        R +S+DVALKDTYFKGSLLDRVAALEHRL QLCL+M+S GSS+NPSS T S+Q S+E I+SSSSPK FC G+ S  SSYPTFHYP++G TSQISQ QEKP
Subjt:  RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDS-GSSTNPSSFT-STQASVE-ISSSSSPKQFCRGEPS--SSYPTFHYPSHGGTSQISQVQEKP

Query:  QRHQQKKKQPSPSKGQ--LGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFG
        QR QQKKKQ S  KGQ  + KT +   +E GSCKNVKKG P  KWPHLR+FG
Subjt:  QRHQQKKKQPSPSKGQ--LGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFG

A0A6J1DZI5 uncharacterized protein LOC111026052

6.9e-99

99.47

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Query:  MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEIS
        MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTST+ASVEIS
Subjt:  MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEIS

Query:  SSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        SSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
Subjt:  SSSSPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

A0A6J1ES90 uncharacterized protein LOC111437264

2.7e-71

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Query:  MEDDAK-LSHQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS
        MED AK L H PQH SSSSSMTL SRLD++D VMKYLE+KQ LER      +C+SLDVALKDTYFKGSLLDRVA+LEHRLFQLCL+MDSGSS+NPSS  S
Subjt:  MEDDAK-LSHQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS

Query:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEK--PQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        TQ S +ISSSS +PKQFCRGEPSSSYP FHYPSHGGTS+ISQ+QEK   QRH+QKKKQ SP K QLGKTRSG KDEGGSCKNVKKGI PPKW HLRMFGC
Subjt:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEK--PQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

A0A6J1K4A8 uncharacterized protein LOC111491560

2.5e-72

79.5

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Query:  MEDDAKLS-HQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS
        MED AKL  H PQH SSSSSMTL SRLD++D VMKYLE+KQ LER      +C+SLDVALKDTYFKGSLLDRVA+LEHRLFQLCL+MDSGSS+NPSS  S
Subjt:  MEDDAKLS-HQPQH-SSSSSMTLLSRLDHLDFVMKYLERKQSLER------RCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTS

Query:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKP--QRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC
        TQ S +ISSSS +PKQFCRGEPSSSYP FHYPSHGGTS+ISQ+QEKP  QRH+QKKKQ SP K QLGKTRSG KDEGGSCKNVKKGI PPKW HLRMFGC
Subjt:  TQASVEISSSS-SPKQFCRGEPSSSYPTFHYPSHGGTSQISQVQEKP--QRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G46795.1 microspore-specific promoter 2

4.5e-18

37.44

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Query:  QPQHSSSSSMTLLSRLDHLDFVMKYLERKQSL----------ERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEI
        + Q  S SS+ +LSRL+HLDFV+K LER+Q+L           R  +    A+++ YFKGSLLDR+AALE RLFQ+CL+++S S     S TST  S E 
Subjt:  QPQHSSSSSMTLLSRLDHLDFVMKYLERKQSL----------ERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEI

Query:  SSSSSPKQFCRGEP--SSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSK--DEGGSCK-NVKKGIPPPKWPHLRMFGC
        SS    +   +  P  SS+   FH P       + +++EK +  ++K+++ +  K  L K    +K  D   +CK   KK   P KW    + GC
Subjt:  SSSSSPKQFCRGEP--SSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSK--DEGGSCK-NVKKGIPPPKWPHLRMFGC

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGATGATGCAAAGTTGTCCCATCAGCCACAACATTCCTCCTCTTCCTCCATGACCCTTCTTTCTAGATTGGATCATTTGGATTTTGTTATGAAGTACTTGGAGAG
AAAACAGAGCTTGGAAAGGAGATGCGTATCGTTGGATGTTGCACTAAAAGATACTTACTTTAAAGGTTCATTGTTGGATCGTGTGGCAGCTCTTGAGCATAGACTTTTTC
AGCTATGCTTAAAGATGGATTCAGGAAGCTCCACAAATCCTTCATCATTCACTTCAACACAAGCATCTGTGGAGATTAGTTCTTCTTCTTCTCCAAAACAGTTTTGCAGA
GGGGAACCTTCTTCTTCATATCCCACATTCCACTACCCAAGCCATGGAGGAACCTCACAAATTTCCCAAGTCCAGGAGAAGCCTCAAAGACATCAACAGAAAAAGAAGCA
ACCCAGTCCTTCAAAAGGGCAACTTGGTAAGACAAGAAGTGGATCAAAGGATGAAGGAGGATCTTGCAAAAATGTGAAGAAAGGGATTCCTCCTCCCAAATGGCCACACT
TGAGGATGTTTGGTTGC

mRNA sequence

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Protein sequence

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MEDDAKLSHQPQHSSSSSMTLLSRLDHLDFVMKYLERKQSLERRCVSLDVALKDTYFKGSLLDRVAALEHRLFQLCLKMDSGSSTNPSSFTSTQASVEISSSSSPKQFCR
GEPSSSYPTFHYPSHGGTSQISQVQEKPQRHQQKKKQPSPSKGQLGKTRSGSKDEGGSCKNVKKGIPPPKWPHLRMFGC

MS017496 (gene) of Bitter gourd (TR) v1 genome