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MS017523 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017523
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf4
Genome locationscaffold373:302562..302663
RNA-Seq ExpressionMS017523
SyntenyMS017523
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QYK18487.1 photosystem I assembly protein Ycf4 [Dryadella lilliputiana]3.6e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
YP_009654617.1 Ycf4 [Alternanthera philoxeroides]3.6e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
YP_009668997.1 photosystem I assembly protein Ycf4 [Galphimia angustifolia]6.1e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
YP_009669747.1 photosystem I assembly protein Ycf4 [Ruizterania albiflora]6.1e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
YP_009945428.1 photosystem I assembly protein Ycf4 [Sechium edule]1.6e-0894.12Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G +PLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
TrEMBL top hitse value%identityAlignment
A0A4D6WJ13 Photosystem I assembly protein Ycf41.7e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
A0A4Y5PPJ9 Photosystem I assembly protein Ycf42.9e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
A0A4Y5PSF6 Photosystem I assembly protein Ycf42.9e-0891.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        GP+PLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
A0A6H0ER30 Photosystem I assembly protein Ycf47.7e-0994.12Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G +PLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Q4FG11 Photosystem I assembly protein Ycf4 (Fragment)5.0e-0894.12Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G VPLTRTDQNLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
SwissProt top hitse value%identityAlignment
A0ZZ46 Photosystem I assembly protein Ycf43.0e-1091.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G VPLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Q2L913 Photosystem I assembly protein Ycf43.0e-1091.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G VPLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Q2QD78 Photosystem I assembly protein Ycf41.8e-1091.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G +PLTRTDQNLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Q49KY7 Photosystem I assembly protein Ycf43.0e-1091.18Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G VPLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Q8S8W6 Photosystem I assembly protein Ycf43.9e-1088.24Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G +PLTRTD+NLTPREIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
Arabidopsis top hitse value%identityAlignment
ATCG00520.1 unfolded protein binding3.4e-0979.41Show/hide
Query:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV
        G +PL RTD+N T REIE KAAELAYFLRVPIEV
Subjt:  GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGCCCGTTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCCAAAGGCTGCTGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT
mRNA sequenceShow/hide mRNA sequence
GGGCCCGTTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCCAAAGGCTGCTGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT
Protein sequenceShow/hide protein sequence
GPVPLTRTDQNLTPREIEPKAAELAYFLRVPIEV