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MS017591 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017591
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAM98A-like isoform X1
Genome locationscaffold373:785575..788929
RNA-Seq ExpressionMS017591
SyntenyMS017591
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606323.1 Ribonuclease P protein subunit p25-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.2e-5796.75Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGL+PVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKN+PG
Subjt:  MTRHVSMISITLSNRELNKNSPG

KAG7036262.1 Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma]5.2e-5796.75Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGL+PVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKN+PG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_022159880.1 protein FAM98A-like [Momordica charantia]1.6e-5899.19Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_022930955.1 glycine-rich RNA-binding protein 10-like [Cucurbita moschata]5.2e-5796.75Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGL+PVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKN+PG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_038887999.1 ribonuclease P protein subunit p25-like isoform X9 [Benincasa hispida]6.1e-5899.19Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

TrEMBL top hitse value%identityAlignment
A0A0A0LE30 Alba domain-containing protein8.0e-5695.93Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISKAVAIAEILKKR  RLHQET+ISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A5A7VGR8 Protein FAM98A-like isoform X18.0e-5695.93Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISKAVAIAEILKKR  RLHQET+ISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A6J1E011 protein FAM98A-like7.8e-5999.19Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIV KAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A6J1EY76 glycine-rich RNA-binding protein 10-like2.5e-5796.75Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGL+PVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKN+PG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A6J1K2C9 protein FAM98A-like9.5e-5795.93Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPE PI+ENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK VAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGL+PVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKN+PG
Subjt:  MTRHVSMISITLSNRELNKNSPG

SwissProt top hitse value%identityAlignment
Q2KIR4 Ribonuclease P protein subunit p25-like protein3.8e-1031.82Show/hide
Query:  MDRYQK-------VEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPI-
        M+ Y+K          P P+ P +  E+R+ +   IRN +  A   L+    R +V    G+A  KAV+ AEI+K+R P L+Q T +  +   D W P  
Subjt:  MDRYQK-------VEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPI-

Query:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG
         + GL P+ +  HV  + + LS   L+ N  G
Subjt:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG

Q8N5L8 Ribonuclease P protein subunit p25-like protein2.6e-1133.33Show/hide
Query:  MDRYQK-------VEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPI-
        M+ Y+K          P P+ P +  E+R+     IRN +  A   L+    R +V    G+A  KAV+ AEI+K+R P LHQ T +  +   D W P  
Subjt:  MDRYQK-------VEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPI-

Query:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG
         + GL P+ + RHV  + + LS   L+ N  G
Subjt:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG

Q99JH1 Ribonuclease P protein subunit p25-like protein9.9e-1134.48Show/hide
Query:  PKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPI--EEGLVPVEMTRHVSM
        P P+ P +  E+R+     IRN +  A   L+    R +V    G+A  KAV+ AEI+K+R P LHQ T +  +   D W P   + GL P+ + RHV  
Subjt:  PKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPI--EEGLVPVEMTRHVSM

Query:  ISITLSNRELNKNSPG
        + + LS   L+ +  G
Subjt:  ISITLSNRELNKNSPG

Arabidopsis top hitse value%identityAlignment
AT1G20220.1 Alba DNA/RNA-binding protein2.6e-3862.6Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MD+YQ+VEKPK + PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+V I E++K+R P LHQ TSI S  ITD WEP EEGL  +E
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
         TRHVSMI+ITLS  +LN +S G
Subjt:  MTRHVSMISITLSNRELNKNSPG

AT1G76010.1 Alba DNA/RNA-binding protein3.6e-4066.67Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MD+YQ+V KPK + PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+K V I E++K+R P LHQ TSI S  ITD WEP EEGL+P+E
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
         TRHVSMI+ITLS  ELN +S G
Subjt:  MTRHVSMISITLSNRELNKNSPG

AT3G07030.1 Alba DNA/RNA-binding protein3.6e-4877.24Show/hide
Query:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE
        MDRYQ+V KPKPE PINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISK VAI+EILK + P LHQ+ +ISS+SITDVWEP EEGL PVE
Subjt:  MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        +TRHVSMISITLS  ELNK+SPG
Subjt:  MTRHVSMISITLSNRELNKNSPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGTATCAGAAGGTCGAGAAACCTAAGCCTGAATATCCGATAAACGAAAACGAAATCCGAATCACCAGTCAAGGCGCCATCCGAAACTACATCACTTATGCTTC
TACCCTGCTCCAGGACAAACGTGTTAGAGAGATAGTCTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCAGTCGCCATTGCAGAAATTTTAAAGAAGAGAACTCCACGAC
TGCATCAGGAAACATCCATCAGCTCTGTGAGCATAACCGATGTATGGGAACCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGTCATGTCTCAATGATTTCAATT
ACCTTGTCTAATCGGGAGCTAAATAAAAACTCTCCTGGG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGTATCAGAAGGTCGAGAAACCTAAGCCTGAATATCCGATAAACGAAAACGAAATCCGAATCACCAGTCAAGGCGCCATCCGAAACTACATCACTTATGCTTC
TACCCTGCTCCAGGACAAACGTGTTAGAGAGATAGTCTTGAAAGCCATGGGGCAGGCAATCAGTAAAGCAGTCGCCATTGCAGAAATTTTAAAGAAGAGAACTCCACGAC
TGCATCAGGAAACATCCATCAGCTCTGTGAGCATAACCGATGTATGGGAACCTATTGAAGAAGGTCTTGTACCTGTGGAGATGACTCGTCATGTCTCAATGATTTCAATT
ACCTTGTCTAATCGGGAGCTAAATAAAAACTCTCCTGGG
Protein sequenceShow/hide protein sequence
MDRYQKVEKPKPEYPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKAVAIAEILKKRTPRLHQETSISSVSITDVWEPIEEGLVPVEMTRHVSMISI
TLSNRELNKNSPG