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MS017594 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017594
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAM98A-like isoform X1
Genome locationscaffold373:798083..799735
RNA-Seq ExpressionMS017594
SyntenyMS017594
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159844.1 ribonuclease P protein subunit p25-like protein [Momordica charantia]1.4e-57100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_031737653.1 RNA-binding protein FUS isoform X1 [Cucumis sativus]1.4e-57100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_031737654.1 protein FAM98A isoform X2 [Cucumis sativus]1.4e-57100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_038888001.1 protein FAM98A-like isoform X2 [Benincasa hispida]1.4e-57100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

XP_038888002.1 protein FAM98A-like isoform X3 [Benincasa hispida]1.4e-57100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

TrEMBL top hitse value%identityAlignment
A0A0A0LE30 Alba domain-containing protein6.6e-58100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A1S3BYB0 protein FAM98A-like isoform X26.6e-58100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A1S3C001 protein FAM98A-like isoform X16.6e-58100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A5A7VGR8 Protein FAM98A-like isoform X16.6e-58100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

A0A6J1E3H2 ribonuclease P protein subunit p25-like protein6.6e-58100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        MTRHVSMISITLSNRELNKNSPG
Subjt:  MTRHVSMISITLSNRELNKNSPG

SwissProt top hitse value%identityAlignment
Q2KIR4 Ribonuclease P protein subunit p25-like protein9.3e-0931.06Show/hide
Query:  MDRYQK-------VEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI-
        M+ Y+K          P P+ P +  E+R+ +   IRN +  A   L+    R +V    G+A  KAV+ AEI+K+R+  L+Q T +  +   D W P  
Subjt:  MDRYQK-------VEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI-

Query:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG
         + GL P+ +  HV  + + LS   L+ N  G
Subjt:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG

Q8N5L8 Ribonuclease P protein subunit p25-like protein6.4e-1032.58Show/hide
Query:  MDRYQK-------VEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI-
        M+ Y+K          P P+ P +  E+R+     IRN +  A   L+    R +V    G+A  KAV+ AEI+K+R+  LHQ T +  +   D W P  
Subjt:  MDRYQK-------VEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI-

Query:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG
         + GL P+ + RHV  + + LS   L+ N  G
Subjt:  -EEGLVPVEMTRHVSMISITLSNRELNKNSPG

Q91WE3 Ribonuclease P protein subunit p255.1e-0729.2Show/hide
Query:  IRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVP----------VEMTRHVSMISI
        +R+     IRN + +A+  + +   R IV    G+A +K V  AEILK+R++ LHQ T +   S+ +VW+ +  G  P          + + ++V  ++I
Subjt:  IRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVP----------VEMTRHVSMISI

Query:  TLSNRELNKNSPG
         LS   L+    G
Subjt:  TLSNRELNKNSPG

Q99JH1 Ribonuclease P protein subunit p25-like protein1.9e-0933.62Show/hide
Query:  PKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI--EEGLVPVEMTRHVSM
        P P+ P +  E+R+     IRN +  A   L+    R +V    G+A  KAV+ AEI+K+R+  LHQ T +  +   D W P   + GL P+ + RHV  
Subjt:  PKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPI--EEGLVPVEMTRHVSM

Query:  ISITLSNRELNKNSPG
        + + LS   L+ +  G
Subjt:  ISITLSNRELNKNSPG

Q9BUL9 Ribonuclease P protein subunit p253.9e-0729.2Show/hide
Query:  IRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEG----------LVPVEMTRHVSMISI
        +R+     IRN + +A+  + +   R IV    G+A +K V  AEILK+R++ LHQ T +   S+ +VW+ +  G             + + ++V  ++I
Subjt:  IRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEG----------LVPVEMTRHVSMISI

Query:  TLSNRELNKNSPG
         LS   L+   PG
Subjt:  TLSNRELNKNSPG

Arabidopsis top hitse value%identityAlignment
AT1G20220.1 Alba DNA/RNA-binding protein7.5e-3862.6Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQE +  E++ KAMG+AI+K+V I E++K+RI  LHQ T+I S  ITD WEP EEGL  +E
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
         TRHVSMI+ITLS  +LN +S G
Subjt:  MTRHVSMISITLSNRELNKNSPG

AT1G76010.1 Alba DNA/RNA-binding protein6.7e-3965.04Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQ+K   E+V KAMG+AI+K V I E++K+RI  LHQ T+I S  ITD WEP EEGL+P+E
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
         TRHVSMI+ITLS  ELN +S G
Subjt:  MTRHVSMISITLSNRELNKNSPG

AT3G07030.1 Alba DNA/RNA-binding protein9.4e-4979.67Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE
        MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQEK V++IVLKAMGQAISK VAI+EILK +I  LHQ+ AISS+SITDVWEP EEGL PVE
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVE

Query:  MTRHVSMISITLSNRELNKNSPG
        +TRHVSMISITLS  ELNK+SPG
Subjt:  MTRHVSMISITLSNRELNKNSPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGGTACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATCAACGAAAACGAGATCCGAATCACAAGTCAAGGCGCCATTCGAAACTACATCACCTATGCCTC
TACATTGCTCCAGGAAAAACGTGTCAGAGAGATTGTCTTAAAAGCAATGGGGCAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGAAGAGAATATCACGGT
TGCATCAAGAAACAGCAATCAGCTCAGTAAGCATCACTGATGTATGGGAACCCATTGAAGAAGGTCTTGTACCGGTGGAGATGACTCGTCACGTCTCAATGATTTCAATT
ACCTTGTCCAACCGAGAGCTAAATAAAAATTCTCCAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGGTACCAGAAGGTCGAGAAGCCCAAACCCGAATCACCCATCAACGAAAACGAGATCCGAATCACAAGTCAAGGCGCCATTCGAAACTACATCACCTATGCCTC
TACATTGCTCCAGGAAAAACGTGTCAGAGAGATTGTCTTAAAAGCAATGGGGCAGGCAATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGAAGAGAATATCACGGT
TGCATCAAGAAACAGCAATCAGCTCAGTAAGCATCACTGATGTATGGGAACCCATTGAAGAAGGTCTTGTACCGGTGGAGATGACTCGTCACGTCTCAATGATTTCAATT
ACCTTGTCCAACCGAGAGCTAAATAAAAATTCTCCAGGG
Protein sequenceShow/hide protein sequence
MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKAVAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISI
TLSNRELNKNSPG