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MS017598 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017598
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold373:817866..818477
RNA-Seq ExpressionMS017598
SyntenyMS017598
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7820682.1 putative ribonuclease H protein At1g65750 family [Senna tora]1.6e-3439.15Show/hide
Query:  FFNCDLQNWLEINLNKHHSS---QWTSTFAVGCWLLWQWRNKGIFEASKQIPED----LSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNI
        FFN DLQ W ++NL ++  S    W  +FA+ CW +W+WRN+ IF    +   D    +   +R  +E F  S   + ++SRKP RR E I W PP    
Subjt:  FFNCDLQNWLEINLNKHHSS---QWTSTFAVGCWLLWQWRNKGIFEASKQIPED----LSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNI

Query:  WKLNTDG-SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLL
         K+N DG S+     +A  GG++R+ +GN+I GF +NLG  T+  AELWG+ SGL  A   G   +I+E+DS  AC +V+       L   ++  I +LL
Subjt:  WKLNTDG-SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLL

Query:  DREWTVTIQHTY
        ++EW V +QHTY
Subjt:  DREWTVTIQHTY

PKI31543.1 hypothetical protein CRG98_048066, partial [Punica granatum]7.5e-3738.24Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG
        FF  DL +WL  NL+  +   W++TFA  CWLLW WRN  +FE+    P     ++ +TA SF + W L+  +     +RW +ISWI P  + +KLNTDG
Subjt:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG

Query:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI
        S+ GNPG A A G++R+ +G WI GF QN+G     +AELWG+L+G E+AW                              + +  +I+ L  R+W V +
Subjt:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI

Query:  QHTY
        QHTY
Subjt:  QHTY

PKI64943.1 hypothetical protein CRG98_014657 [Punica granatum]6.4e-3641.4Show/hide
Query:  WLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDGSAYGNPGK
        WL  NL +   S W S FA+ CWL+W WRNK +F+     PE  + ++ RTA  F +SW     +     + W DI W+ P  +  KLNT GS  GNPG 
Subjt:  WLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDGSAYGNPGK

Query:  AGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDR
        AGAG +IRN  G W+ GF QN+  T+  + ELWG+L+GLELAWNLG   +I+E DS    N +          +  + +I +L  R
Subjt:  AGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDR

XP_031376896.1 uncharacterized protein LOC116192475 [Punica granatum]9.2e-4343.14Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG
        FF+  L+ WL +NL      +W++ F V CWLLW WRNKG+FE     P D   ++R TA +F  +  L +  S +P R W  I W  P P   K+NTDG
Subjt:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG

Query:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI
        ++ GNPG AGAGG++RN +G+WI GF  N+G+ T+ +AELWG L GL+LAW+ G R++++E DS+    L+ + S     + P++S I  +L R+W + +
Subjt:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI

Query:  QHTY
         HTY
Subjt:  QHTY

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]1.0e-4143.27Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQ----WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKL
        F +  L NWL  NL+    +Q    W   F VGCWL+W WRNK IF+ +   P+D   S+ R AESF   W+    + R+  R W+ + W  P     KL
Subjt:  FFNCDLQNWLEINLNKHHSSQ----WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKL

Query:  NTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREW
        NTDG++ GNPG AGAGGV+R  +G W   F +N+G  TA VAELWG+LSGLELAW LG R +++E DS     L+         +R I+ +I   L+R+W
Subjt:  NTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREW

Query:  TVTIQHTY
         V + H Y
Subjt:  TVTIQHTY

TrEMBL top hitse value%identityAlignment
A0A2I0HIV6 Uncharacterized protein (Fragment)3.6e-3738.24Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG
        FF  DL +WL  NL+  +   W++TFA  CWLLW WRN  +FE+    P     ++ +TA SF + W L+  +     +RW +ISWI P  + +KLNTDG
Subjt:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG

Query:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI
        S+ GNPG A A G++R+ +G WI GF QN+G     +AELWG+L+G E+AW                              + +  +I+ L  R+W V +
Subjt:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI

Query:  QHTY
        QHTY
Subjt:  QHTY

A0A2I0KA00 RNase H domain-containing protein3.1e-3641.4Show/hide
Query:  WLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDGSAYGNPGK
        WL  NL +   S W S FA+ CWL+W WRNK +F+     PE  + ++ RTA  F +SW     +     + W DI W+ P  +  KLNT GS  GNPG 
Subjt:  WLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDGSAYGNPGK

Query:  AGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDR
        AGAG +IRN  G W+ GF QN+  T+  + ELWG+L+GLELAWNLG   +I+E DS    N +          +  + +I +L  R
Subjt:  AGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDR

A0A6P4B9V8 uncharacterized protein LOC1074621171.7e-3437.26Show/hide
Query:  FFNCDLQNW----LEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPED----LSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPN
        FF      W    L ++L       W + F V CW LW+WRN+ IF    Q P      +   V+   E+F K         ++  +   +I W  P  +
Subjt:  FFNCDLQNW----LEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPED----LSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPN

Query:  IWKLNTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLL
          K+NTDG+A GNPG AG GG+IRNY+G WI GF  N+GY TA+ AELWG+  GL+ AW LG R +I+E DS+A  ++++  +        I+ KI+++L
Subjt:  IWKLNTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLL

Query:  DREWTVTIQHTY
         R+W   + H+Y
Subjt:  DREWTVTIQHTY

A0A6P8C599 uncharacterized protein LOC1161924754.4e-4343.14Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG
        FF+  L+ WL +NL      +W++ F V CWLLW WRNKG+FE     P D   ++R TA +F  +  L +  S +P R W  I W  P P   K+NTDG
Subjt:  FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDG

Query:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI
        ++ GNPG AGAGG++RN +G+WI GF  N+G+ T+ +AELWG L GL+LAW+ G R++++E DS+    L+ + S     + P++S I  +L R+W + +
Subjt:  SAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTI

Query:  QHTY
         HTY
Subjt:  QHTY

A0A6P8E5K3 uncharacterized protein LOC1162123244.9e-4243.27Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQ----WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKL
        F +  L NWL  NL+    +Q    W   F VGCWL+W WRNK IF+ +   P+D   S+ R AESF   W+    + R+  R W+ + W  P     KL
Subjt:  FFNCDLQNWLEINLNKHHSSQ----WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKL

Query:  NTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREW
        NTDG++ GNPG AGAGGV+R  +G W   F +N+G  TA VAELWG+LSGLELAW LG R +++E DS     L+         +R I+ +I   L+R+W
Subjt:  NTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREW

Query:  TVTIQHTY
         V + H Y
Subjt:  TVTIQHTY

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.4e-2231.88Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQ---WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLN
        FF+  L  WL  NL      +   W++ FAV  W  W+WR   IF  + +   D    V+  A    ++      +    PR    I W+ P     K+N
Subjt:  FFNCDLQNWLEINLNKHHSSQ---WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLN

Query:  TDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWT
        TDG++ GNPG A AGGV+R+  G W  GF  N+G  +A  AELWG+  GL  AW      + +E DSE     ++     +  +  ++      L ++W 
Subjt:  TDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWT

Query:  VTIQHTY
        V I H Y
Subjt:  VTIQHTY

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein5.1e-0730.85Show/hide
Query:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLL
        DG++ GNPG +GA  V++  +G+ I   +Q LG  T   AE   ++ GL+ A   G +N+ V+ DS+  C  ++ + +    +   + K  +LL
Subjt:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLL

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.6e-0739.19Show/hide
Query:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVR
        DG++ GNPGKAGAG V+R  + + +   ++ +G  T  VAE   +L GL  A + G +N+ V  DS   C  V+
Subjt:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVR

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.6e-0739.19Show/hide
Query:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVR
        DG++ GNPGKAGAG V+R  + + +   ++ +G  T  VAE   +L GL  A + G +N+ V  DS   C  V+
Subjt:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVR

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.9e-2331.75Show/hide
Query:  FFNCDLQNWLEINLNKHHSSQ---WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKL--------MATLSRKPPRRWEDISWIPP
        FF+  L  WL  NL    S +   W++ FAV  W  W+WR   IF  + +          R    F+K W +         A +    PR    I W+ P
Subjt:  FFNCDLQNWLEINLNKHHSSQ---WTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKL--------MATLSRKPPRRWEDISWIPP

Query:  QPNIWKLNTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKII
             K+NTDG++ GNPG A AGGV+R+ EG W  GF  N+G  +A  AELWG+  GL  AW      + +E DSEA    ++     +  +  ++    
Subjt:  QPNIWKLNTDGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKII

Query:  QLLDREWTVTI
          L ++W + +
Subjt:  QLLDREWTVTI

AT5G51080.1 RNase H family protein1.1e-0629.52Show/hide
Query:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQAT-ALIRPIMSKIIQLLDREWT
        DG++ GNPG +GA  V++  +G+ I   +Q LG  T   AE  G++ GL+ A   G   + V++DS+  C  ++ + +    ++  +  +  QL D+  +
Subjt:  DGSAYGNPGKAGAGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQAT-ALIRPIMSKIIQLLDREWT

Query:  VTIQH
          I H
Subjt:  VTIQH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTTTAACTGTGATTTGCAGAATTGGTTGGAAATAAATCTGAACAAGCATCATTCATCACAGTGGACATCCACATTCGCGGTGGGATGCTGGTTATTATGGCAATGGAG
GAATAAAGGCATTTTTGAGGCCTCAAAACAGATACCAGAGGATCTAAGCTCAAGTGTTCGAAGGACAGCCGAAAGTTTTATGAAGTCTTGGAAATTGATGGCTACCCTTT
CAAGGAAACCACCACGCCGTTGGGAAGATATTAGCTGGATTCCACCACAACCAAATATCTGGAAACTAAATACTGATGGTTCCGCTTATGGTAATCCAGGGAAGGCGGGA
GCAGGTGGCGTTATCAGGAACTATGAAGGGAATTGGATAAAGGGCTTTCAACAGAATTTAGGATATACAACAGCCTTTGTCGCAGAGTTATGGGGCATTTTATCAGGTCT
AGAGCTAGCTTGGAATCTGGGATGCAGAAATCTAATTGTGGAATCAGATTCTGAAGCTGCTTGTAACTTGGTGCGAAATAGATCACAAGCTACAGCTTTAATTAGACCAA
TTATGTCAAAAATTATTCAATTACTGGACAGGGAGTGGACGGTAACAATTCAACACACCTAC
mRNA sequenceShow/hide mRNA sequence
TTTTTTAACTGTGATTTGCAGAATTGGTTGGAAATAAATCTGAACAAGCATCATTCATCACAGTGGACATCCACATTCGCGGTGGGATGCTGGTTATTATGGCAATGGAG
GAATAAAGGCATTTTTGAGGCCTCAAAACAGATACCAGAGGATCTAAGCTCAAGTGTTCGAAGGACAGCCGAAAGTTTTATGAAGTCTTGGAAATTGATGGCTACCCTTT
CAAGGAAACCACCACGCCGTTGGGAAGATATTAGCTGGATTCCACCACAACCAAATATCTGGAAACTAAATACTGATGGTTCCGCTTATGGTAATCCAGGGAAGGCGGGA
GCAGGTGGCGTTATCAGGAACTATGAAGGGAATTGGATAAAGGGCTTTCAACAGAATTTAGGATATACAACAGCCTTTGTCGCAGAGTTATGGGGCATTTTATCAGGTCT
AGAGCTAGCTTGGAATCTGGGATGCAGAAATCTAATTGTGGAATCAGATTCTGAAGCTGCTTGTAACTTGGTGCGAAATAGATCACAAGCTACAGCTTTAATTAGACCAA
TTATGTCAAAAATTATTCAATTACTGGACAGGGAGTGGACGGTAACAATTCAACACACCTAC
Protein sequenceShow/hide protein sequence
FFNCDLQNWLEINLNKHHSSQWTSTFAVGCWLLWQWRNKGIFEASKQIPEDLSSSVRRTAESFMKSWKLMATLSRKPPRRWEDISWIPPQPNIWKLNTDGSAYGNPGKAG
AGGVIRNYEGNWIKGFQQNLGYTTAFVAELWGILSGLELAWNLGCRNLIVESDSEAACNLVRNRSQATALIRPIMSKIIQLLDREWTVTIQHTY