CuGenDBv2

Gene ID	MS017601
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription initiation factor IIF subunit alpha
Genome location	scaffold373:841769..846228
RNA-Seq Expression	MS017601
Synteny	MS017601
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0001096 - TFIIF-class transcription factor complex binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR008851 - Transcription initiation factor IIF, alpha subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152016.1 transcription initiation factor IIF subunit alpha isoform X1 [Cucumis sativus]

7.6e-270

92.42

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDLLLK SCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASAS+DKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDK+ VG SGRGRRKTTGDENEGN SDRGEEDEEEEAARKNRLGL+KK  GDDDDEEGPRGGDHD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK
        ETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDV+ED GGTPV+ SKQKDTVKEEAAA+SPSK
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK

Query:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK
        P PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SK+TDEGV TSKSTASKGAPASVKTE +  SGPVTEEEIRAVLRQRTPVTTQDLVAK
Subjt:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK

Query:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        FKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_016900419.1 PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha [Cucumis melo]

5.4e-268

91.87

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Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDLLLKPSCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAE KMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDK+ VG SGRGRRKTTGDENEGN SDRGEEDEEEEAARKNRLGL+KK  GDDDDEEGPRGGDHD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK
        ETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDD+DDDDV+ED GGTPV+ SKQKDTVKEEAAA+SPSK
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK

Query:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK
        P PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+ K TDEGV TSKSTASKGAPASVKTE +  SGPVTEEEIRAVLRQRTPVTTQDLVAK
Subjt:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK

Query:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        FKARLR+ EDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022159266.1 transcription initiation factor IIF subunit alpha [Momordica charantia]

3.5e-291

99.63

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDE
        SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDE
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDE

Query:  TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKP
        TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKP
Subjt:  TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKP

Query:  IPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKF
        IPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKF
Subjt:  IPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKF

Query:  KARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022931161.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita moschata]

9.6e-265

91.33

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MS DLLLKPSCSGCGS+T+LYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRAS+SSDKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQL+DALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDKD+VGA+GRGRRK T DENEGN SDRGEEDEEEEAARKNRLGLNKK  GDDDDEEGPRGG+HD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG-EDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPS
        ETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+DDDDDD EE+ GGTPV  SKQKD VKEEAAA+SPS
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG-EDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPS

Query:  KPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVA
        KP PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SKSTDEGVSTS+STASKGA ASVKTE A  SGPVTEEEIRAVLRQRTPVTTQDLVA
Subjt:  KPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVA

Query:  KFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KFKARLRS EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_038888042.1 transcription initiation factor IIF subunit alpha isoform X1 [Benincasa hispida]

1.9e-268

92.42

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDL+LKPSCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFS+KRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDK+ VG SGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGLNKK  GDDDDEEGPRGGDHD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK
        ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDV+ED GGTPV+ SKQKDTVKEEAAA+SPSK
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK

Query:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK
        P PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SKSTDE VSTSKSTASKGAPA VKTE A  SGPVTEEEIRAVLRQRTPVTTQDLVAK
Subjt:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK

Query:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        FKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCA6 Transcription initiation factor IIF subunit alpha

3.7e-270

92.42

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDLLLK SCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASAS+DKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDK+ VG SGRGRRKTTGDENEGN SDRGEEDEEEEAARKNRLGL+KK  GDDDDEEGPRGGDHD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK
        ETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDV+ED GGTPV+ SKQKDTVKEEAAA+SPSK
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK

Query:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK
        P PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SK+TDEGV TSKSTASKGAPASVKTE +  SGPVTEEEIRAVLRQRTPVTTQDLVAK
Subjt:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK

Query:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        FKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A1S4DWR2 Transcription initiation factor IIF subunit alpha

2.6e-268

91.87

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDLLLKPSCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAE KMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDK+ VG SGRGRRKTTGDENEGN SDRGEEDEEEEAARKNRLGL+KK  GDDDDEEGPRGGDHD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK
        ETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDD+DDDDV+ED GGTPV+ SKQKDTVKEEAAA+SPSK
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSK

Query:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK
        P PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+ K TDEGV TSKSTASKGAPASVKTE +  SGPVTEEEIRAVLRQRTPVTTQDLVAK
Subjt:  PIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAK

Query:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        FKARLR+ EDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  FKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1E3E1 Transcription initiation factor IIF subunit alpha

1.7e-291

99.63

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDE
        SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDE
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDE

Query:  TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKP
        TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKP
Subjt:  TTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKP

Query:  IPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKF
        IPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKF
Subjt:  IPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKF

Query:  KARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1ESX1 Transcription initiation factor IIF subunit alpha

4.6e-265

91.33

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MS DLLLKPSCSGCGS+T+LYGSNCKHMTLCL CGKTMAENKGKCYDCGATVTRLIREYNVRAS+SSDKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQL+DALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD
        SNGPAAFGEVEKFDDKD+VGA+GRGRRK T DENEGN SDRGEEDEEEEAARKNRLGLNKK  GDDDDEEGPRGG+HD+DDDDIEKGDDWEHEEIFTDDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDD

Query:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG-EDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPS
        ETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+DDDDDD EE+ GGTPV  SKQKD VKEEAAA+SPS
Subjt:  ETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG-EDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPS

Query:  KPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVA
        KP PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET+SKSTDEGVSTS+STASKGA ASVKTE A  SGPVTEEEIRAVLRQRTPVTTQDLVA
Subjt:  KPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVA

Query:  KFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        KFKARLRS EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  KFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1K1N5 Transcription initiation factor IIF subunit alpha

2.8e-262

90.28

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MS DLLLKPSCSGCGS+T+LYGSNCKHMTLCL+CGKTMAENKGKCYDCGATVTRLIREYNVRAS+SSDKNYFIGRFMSGLPNFS+KRNAENKWSLYKEGL
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQL+DALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEK-GDDWEHEEIFTDD
        SNGPAAFGEVEKFDDKD++GA+GRGRRK T DENEGN SDRGEEDEEEEAARKNRLGLNKK  GDDDDEEGPRGGDHD+DDDDIE  GDDWEHEEIFTDD
Subjt:  SNGPAAFGEVEKFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKK-SGDDDDEEGPRGGDHDMDDDDIEK-GDDWEHEEIFTDD

Query:  DETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG---EDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAAS
        DETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSKSGKELKKLLRR+GGLNDSDG   EDDDDDDD EE+ GGTPV  SKQKD VKEEAAA+
Subjt:  DETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG---EDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAAS

Query:  SPSKPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQD
        SPSKP PSGS+KGT S+ K +KGKRK NG+DVKPS+ PPKK+KTET+SKSTDEG+STS+STASKGA ASVKTE A  SGPVTEEEIRAVLRQRTPVTTQD
Subjt:  SPSKPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQD

Query:  LVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        LVAKFKARLRS EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  LVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

SwissProt top hits

e value

%identity

Alignment

Q05913 General transcription factor IIF subunit 1

6.1e-04

27.23

Show/hide

Query:  RPWLLE--DETGQFQFQGHLEG--SQSATYYLLV-LQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEV
        +PW+L+   +TG+ +F+G  EG   ++A +Y+          A P   W  YNF  + +YK L+ EEAE++   RKK  + Y   M++    G     E 
Subjt:  RPWLLE--DETGQFQFQGHLEG--SQSATYYLLV-LQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEV

Query:  EKFDDKDA---VGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDD----EEGPRGGD-----HDMDDDDIEKGDDWEHEEIFTDD
        E+ D ++A     A+ + +     D +E   S+   + E+EE  +K      K+  D DD     +G +G D      D+DD+  E+ DD + E    D 
Subjt:  EKFDDKDA---VGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDD----EEGPRGGD-----HDMDDDDIEKGDDWEHEEIFTDD

Query:  DETTA---PDREERED---------------LAPEVPAPPEIKQDEDDEDE-------ENEGEGGLSKSGKELKKL----LRRTGGLNDSDGEDDDDDDD
        D +++   PD E + D               L  +     E K DE D+++       +++G+  +SK  K+ K        ++ G  DS  +   D  D
Subjt:  DETTA---PDREERED---------------LAPEVPAPPEIKQDEDDEDE-------ENEGEGGLSKSGKELKKL----LRRTGGLNDSDGEDDDDDDD

Query:  VEEDIGGTP-----VVASKQKDTVKEEAAASSPSKPIPSGSS-----KGTPS-STKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTAS
         E+D+   P     VV  K K+  KE+ +A+S SK I S S+       TP+ ST AS  KRK+N       ++P     ++T +  T       K+  S
Subjt:  VEEDIGGTP-----VVASKQKDTVKEEAAASSPSKPIPSGSS-----KGTPS-STKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTAS

Query:  KGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKAR---LRSQEDKNAFAEILRRISRIQKTNGGPSYVVLR
           P S         G +TEE +R  L+ R P+T  +L+ KFK +   + S        +IL++I+ ++ T  G  Y+ ++
Subjt:  KGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKAR---LRSQEDKNAFAEILRRISRIQKTNGGPSYVVLR

Q54WV4 General transcription factor IIF subunit 1

1.2e-12

27.59

Show/hide

Query:  KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQGK-EFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVE
        K  PW LED  G   +QG++EG+Q S+ Y+L + Q      A+P   W  YNF    +++ LT EEAE+ MK + +  D +   + K      +  G  E
Subjt:  KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQGK-EFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVE

Query:  KFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREERED
            K          R    D N    ++  EE ++++A  + R   ++ +G+D D         D DDD    GD        T +DE    + EE ED
Subjt:  KFDDKDAVGASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREERED

Query:  LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQ------KDTVKEEAAASSPSKPIPSGS
        +        E+K+    + ++N+ E  L+    + K     TGG +D D ++DD+D D ++D+   P V  K         +VK+E      SK      
Subjt:  LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQ------KDTVKEEAAASSPSKPIPSGS

Query:  SKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSG-PVTEEEIRAVLRQRTPVTTQDLVAKFKARL
         K   SS K+ + K K N  D    N   KK+K E  S    +  S S+           + ++  P+  P TEE I+ VL++   V + DL+  FK  L
Subjt:  SKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTETDSKSTDEGVSTSKSTASKGAPASVKTESALPSG-PVTEEEIRAVLRQRTPVTTQDLVAKFKARL

Query:  RSQEDKNAFAEILRRISRIQKTNG
        ++ ++K  F  ++  ++R+ + NG
Subjt:  RSQEDKNAFAEILRRISRIQKTNG

Q9SU25 Transcription initiation factor IIF subunit alpha

2.0e-185

68.49

Show/hide

Query:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL
        MS  L L  SC GCGS +DLYGS+C+HMTLCL CG+TMA+NK KC++CG  VTRLIREYNVRA+A +DKNYFIGRF++GLPNF  K+ +ENKWSL K+  
Subjt:  MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGL

Query:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
        QGRQ +DA REK KN+PW+LEDETGQFQ+QGHLEGSQSATYYLLV+Q KEF AIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA
Subjt:  QGRQLSDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA

Query:  SNGPAAFGEVEKFDDKDAV-GASGRGRRKTT-GDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDD
        +NGPA FGEV+   +     G  GRGR+K++ GDE EGN SDRG+EDEEEEA+RK+RLGLN+KS DDDDEEGPRGGD DMDDDDIEKGDDWEHEEIFTDD
Subjt:  SNGPAAFGEVEKFDDKDAV-GASGRGRRKTT-GDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDD

Query:  DETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSP
        DE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL++SD +DDDD DD EE   GT V  SKQK+  KEE   ++P
Subjt:  DETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSP

Query:  SKPIPSGSSKGTPSSTKASKGKRKLN-GDDVKPSNVPPKKVKTETDSKST---DEGVSTSKST----ASKGAPASV-KTESALPSGPVTEEEIRAVLRQR
        +KP PSG  +GTP + K SKGKRKLN GD  KPS+   KKVKTE D KS+   +   + SKS     A K  PAS   + S+  +GPVTE+EIRAVL ++
Subjt:  SKPIPSGSSKGTPSSTKASKGKRKLN-GDDVKPSNVPPKKVKTETDSKST---DEGVSTSKST----ASKGAPASV-KTESALPSGPVTEEEIRAVLRQR

Query:  TPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRK
          VTTQDLV++FKARL+++EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  TPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Arabidopsis top hits

e value

%identity

Alignment

AT4G12610.1 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

3.1e-120

66.83

Show/hide

Query:  LQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDAV-GASGRGRRKTT-GDENEGNASDRGE
        +Q KEF AIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+   +     G  GRGR+K++ GDE EGN SDRG+
Subjt:  LQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDAV-GASGRGRRKTT-GDENEGNASDRGE

Query:  EDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKS
        EDEEEEA+RK+RLGLN+KS DDDDEEGPRGGD DMDDDDIEKGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKS
Subjt:  EDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKS

Query:  GKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKPIPSGSSKGTPSSTKASKGKRKLN-GDDVKPSNVPPKKVKTET
        GKELKKLL +  GL++SD +DDDD DD EE   GT V  SKQK+  KEE   ++P+KP PSG  +GTP + K SKGKRKLN GD  KPS+   KKVKTE 
Subjt:  GKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKPIPSGSSKGTPSSTKASKGKRKLN-GDDVKPSNVPPKKVKTET

Query:  DSKST---DEGVSTSKST----ASKGAPASV-KTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYV
        D KS+   +   + SKS     A K  PAS   + S+  +GPVTE+EIRAVL ++  VTTQDLV++FKARL+++EDKNAFA ILR+IS+IQK  G  ++V
Subjt:  DSKST---DEGVSTSKST----ASKGAPASV-KTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYV

Query:  VLRK
        VLR+
Subjt:  VLRK

AT4G12610.2 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

3.1e-120

66.83

Show/hide

Query:  LQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDAV-GASGRGRRKTT-GDENEGNASDRGE
        +Q KEF AIPAGSW  YNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+   +     G  GRGR+K++ GDE EGN SDRG+
Subjt:  LQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDAV-GASGRGRRKTT-GDENEGNASDRGE

Query:  EDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKS
        EDEEEEA+RK+RLGLN+KS DDDDEEGPRGGD DMDDDDIEKGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKS
Subjt:  EDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKS

Query:  GKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKPIPSGSSKGTPSSTKASKGKRKLN-GDDVKPSNVPPKKVKTET
        GKELKKLL +  GL++SD +DDDD DD EE   GT V  SKQK+  KEE   ++P+KP PSG  +GTP + K SKGKRKLN GD  KPS+   KKVKTE 
Subjt:  GKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKPIPSGSSKGTPSSTKASKGKRKLN-GDDVKPSNVPPKKVKTET

Query:  DSKST---DEGVSTSKST----ASKGAPASV-KTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYV
        D KS+   +   + SKS     A K  PAS   + S+  +GPVTE+EIRAVL ++  VTTQDLV++FKARL+++EDKNAFA ILR+IS+IQK  G  ++V
Subjt:  DSKST---DEGVSTSKST----ASKGAPASV-KTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYV

Query:  VLRK
        VLR+
Subjt:  VLRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATTCGATCTGCTGCTGAAGCCGTCGTGCAGTGGATGCGGGTCCTCGACGGATTTGTATGGGAGCAATTGTAAGCACATGACTTTGTGCTTGACCTGCGGCAAAAC
TATGGCTGAGAATAAGGGCAAATGTTACGACTGTGGCGCTACTGTAACTCGCTTAATAAGAGAATACAATGTTCGAGCAAGTGCAAGTAGCGACAAGAACTACTTCATTG
GTAGGTTCATGAGTGGGCTGCCAAACTTCTCGAGGAAGAGAAATGCTGAAAATAAATGGTCTCTTTACAAGGAAGGTCTTCAAGGACGCCAGCTTTCTGATGCCTTGCGG
GAGAAATACAAGAATAGACCCTGGCTCTTGGAAGATGAAACGGGCCAATTTCAGTTCCAAGGACATCTTGAAGGTTCACAGTCAGCAACATATTACTTGCTTGTATTGCA
AGGGAAGGAATTTACTGCCATTCCTGCTGGTTCTTGGTACGAGTACAATTTCAACAAAGTGGCACAGTATAAGCAACTTACGTTGGAGGAGGCAGAAGAGAAAATGAAGA
ATCGAAAGAAAACAGCTGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCTGCTTTTGGTGAAGTCGAGAAGTTTGATGACAAAGATGCTGTTGGT
GCTAGTGGTCGGGGGCGCAGGAAAACTACTGGTGATGAGAATGAAGGTAATGCCTCAGATAGGGGAGAAGAAGATGAAGAAGAAGAGGCGGCAAGGAAGAACAGGTTGGG
CCTCAATAAAAAGAGCGGCGATGATGATGATGAGGAAGGTCCTAGGGGAGGTGACCATGACATGGACGATGATGATATTGAGAAAGGAGATGATTGGGAGCACGAAGAAA
TTTTTACTGATGATGACGAAACTACTGCTCCTGATCGTGAAGAAAGGGAGGATTTGGCCCCCGAGGTTCCGGCACCTCCAGAAATCAAGCAGGATGAAGACGACGAGGAT
GAAGAAAATGAAGGGGAGGGTGGTCTGAGCAAATCTGGAAAAGAGTTGAAGAAATTGCTTAGGCGTACTGGAGGTCTTAATGATTCAGATGGAGAGGATGACGACGACGA
TGACGATGTGGAGGAGGATATTGGTGGCACCCCAGTTGTGGCTTCGAAGCAGAAGGATACAGTTAAAGAAGAAGCTGCAGCCAGCAGTCCCTCAAAGCCTATACCTTCTG
GATCTTCTAAGGGAACCCCGTCTTCTACGAAGGCATCCAAGGGGAAAAGAAAATTAAATGGCGACGATGTGAAACCATCTAATGTACCTCCGAAGAAAGTGAAAACCGAG
ACGGACTCGAAGTCTACAGACGAGGGTGTGTCTACATCTAAAAGTACGGCCTCGAAAGGTGCACCGGCATCAGTCAAAACAGAATCGGCATTGCCTTCTGGACCTGTTAC
TGAAGAAGAAATCAGGGCTGTTTTGCGGCAAAGGACTCCTGTGACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTAAGGTCTCAAGAGGACAAGAATGCATTTG
CAGAAATACTGAGGAGAATTTCAAGGATCCAAAAGACTAATGGAGGACCAAGTTATGTTGTGTTGAGAAAACCTGAAGAC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFDLLLKPSCSGCGSSTDLYGSNCKHMTLCLTCGKTMAENKGKCYDCGATVTRLIREYNVRASASSDKNYFIGRFMSGLPNFSRKRNAENKWSLYKEGLQGRQLSDALR
EKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGSWYEYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDAVG
ASGRGRRKTTGDENEGNASDRGEEDEEEEAARKNRLGLNKKSGDDDDEEGPRGGDHDMDDDDIEKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDED
EENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDVEEDIGGTPVVASKQKDTVKEEAAASSPSKPIPSGSSKGTPSSTKASKGKRKLNGDDVKPSNVPPKKVKTE
TDSKSTDEGVSTSKSTASKGAPASVKTESALPSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSQEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

MS017601 (gene) of Bitter gourd (TR) v1 genome