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MS017602 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017602
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-like zinc finger protein, putative
Genome locationscaffold373:848611..849165
RNA-Seq ExpressionMS017602
SyntenyMS017602
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606329.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4159.49Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA S    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        PMYI     AAH +  HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE++VLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_022159689.1 protein LATE FLOWERING [Momordica charantia]8.5e-9698.92Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRIS YAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
         AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
Subjt:  AAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_022996351.1 protein LATE FLOWERING-like [Cucurbita maxima]1.2e-4159.49Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA +    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        PMYI     AAH  + HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE+NVLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_023532770.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]4.6e-4158.97Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+   V ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA S    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        PMYI     AAH ++ HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE++VLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]7.8e-4962.37Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        ME EEK+SQV E++N  +E EE P+RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY+ TNF SP  P P PP  +F AS    H GL P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        P+YI     A H ++ HCFPNNQ L             +ENMVY G     +RY Q G DE+N+LNW+RS+KK++SRI+HDKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein1.8e-3859.77Show/hide
Query:  EEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP
        EE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DY+     SP  P P P   +FAAS    H GL P P+YI     A H ++ HCFP
Subjt:  EEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP

Query:  NNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        NNQ L             +ENMV+ G     +RY Q   DE+N+LNW+R++KK++SRI+HDKEKE+KLDLSLHL
Subjt:  NNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like5.6e-3754.23Show/hide
Query:  MEDEEKVSQVG--ESSNFE-----MEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPP--PPPPPIFAASH-
        ME EE +S+V   E++N +     +E EE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DY      S SPP P   P   +FAAS  
Subjt:  MEDEEKVSQVG--ESSNFE-----MEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPP--PPPPPIFAASH-

Query:  ----TGLWPPPMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGS--RYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLH
             GL P P+YI     A H ++ HCFPNNQ L             +ENMV+ G      ++ +DE+N+LNW+R++K ++SRI+HDKEKE+KLDLSLH
Subjt:  ----TGLWPPPMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGS--RYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLH

Query:  L
        L
Subjt:  L

A0A6J1E329 protein LATE FLOWERING4.1e-9698.92Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRIS YAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
         AAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
Subjt:  AAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING3.8e-4158.97Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+SDY+ ++  S S      P  +FA +    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        P+YI     AAH ++ HCFPNN Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE +VLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like5.8e-4259.49Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP
        MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDY+ ++  S        P  +FA +    H  + P 
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPP

Query:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
        PMYI     AAH  + HCFPN+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE+NVLNWQRS+KK       DKEKE+KLDLSLHL
Subjt:  PMYIAAAAAAAHASHYHCFPNN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 26.9e-0868.42Show/hide
Query:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +
Subjt:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

Q39263 Zinc finger protein 41.3e-1160Show/hide
Query:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        +S   ESSN E +Q++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Subjt:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

Q39266 Zinc finger protein 79.0e-0869.23Show/hide
Query:  EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA
        E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A
Subjt:  EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA

Q9FFX4 Zinc finger protein KNUCKLES9.0e-0850Show/hide
Query:  KVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK
        K     +  +F         R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Subjt:  KVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK

Q9FKA9 Protein LATE FLOWERING2.3e-1134.57Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        +E EE++    E++  +     +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+   N    +        P+F +S     P   ++
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
              A AS   CFP    +  +    G+ +  A   +     G    Q   D          +  + + ++ DK K++ LDLSLHL
Subjt:  AAAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 76.4e-0969.23Show/hide
Query:  EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA
        E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A
Subjt:  EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA

AT1G66140.1 zinc finger protein 49.6e-1360Show/hide
Query:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        +S   ESSN E +Q++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Subjt:  VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein6.4e-0950Show/hide
Query:  KVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK
        K     +  +F         R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Subjt:  KVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK

AT5G48890.1 C2H2-like zinc finger protein1.6e-1234.57Show/hide
Query:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI
        +E EE++    E++  +     +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+   N    +        P+F +S     P   ++
Subjt:  MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI

Query:  AAAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL
              A AS   CFP    +  +    G+ +  A   +     G    Q   D          +  + + ++ DK K++ LDLSLHL
Subjt:  AAAAAAAHASHYHCFPN---NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

AT5G57520.1 zinc finger protein 24.9e-0968.42Show/hide
Query:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +
Subjt:  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTT
TCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCAC
CTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCC
CATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACA
ATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCC
ATCTA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTT
TCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCAC
CTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCC
CATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACA
ATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCC
ATCTA
Protein sequenceShow/hide protein sequence
MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHAS
HYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL