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MS017609 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017609
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationscaffold373:899027..900701
RNA-Seq ExpressionMS017609
SyntenyMS017609
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036274.1 Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5485.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
         SSPDPE ELD+AMEDEAFRI S K+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]1.2e-6499.21Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
        GSSPDPETELDRAMEDEAFRIFSSK+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

XP_022931150.1 zinc finger HIT domain-containing protein 3 [Cucurbita moschata]2.6e-5485.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
         SSPDPE ELD+AMEDEAFRI S K+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]8.8e-5586.51Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
         SSPDPE ELD+AMEDEAFRI SSK+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

XP_023533050.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo]1.2e-5485.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSE+RNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
         SSPDPE ELD+AMEDEAFRI SSK+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein1.1e-5385.04Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG+ VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE LQK I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA

Query:  IGSSPDPETELDRAMEDEAFRIFSSKV
        I SSPDPETE+D+AMEDEAFRIFSSK+
Subjt:  IGSSPDPETELDRAMEDEAFRIFSSKV

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X14.0e-5385.04Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS  DQSTAPNGS VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE L+K I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICA

Query:  IGSSPDPETELDRAMEDEAFRIFSSKV
        I SS DPETELD+AMEDEAFRIFSSK+
Subjt:  IGSSPDPETELDRAMEDEAFRIFSSKV

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X15.9e-6599.21Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
        GSSPDPETELDRAMEDEAFRIFSSK+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

A0A6J1ESW0 zinc finger HIT domain-containing protein 31.2e-5485.71Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
         SSPDPE ELD+AMEDEAFRI S K+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

A0A6J1JZX2 zinc finger HIT domain-containing protein 34.3e-5586.51Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFSSKV
         SSPDPE ELD+AMEDEAFRI SSK+
Subjt:  GSSPDPETELDRAMEDEAFRIFSSKV

SwissProt top hitse value%identityAlignment
Q15649 Zinc finger HIT domain-containing protein 37.1e-0728.03Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE
        C +C E P KY+CP C  PYCS+VCF+KHKE   P  +PV    +S  P            + S+ D  +  +++ + +    L+ +  S+ +R+ L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE

Query:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFS
         L++L+  +    D    +   M++  F  F+
Subjt:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFS

Q2KIH1 Zinc finger HIT domain-containing protein 31.3e-0559.46Show/hide
Query:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP
        G   C VC E P KY+CP C  PYCSL CF+KHK  P
Subjt:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)2.1e-0627.27Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE
        C +C E P KY+CP C  PYCS+ CF+KHKE   P  +PV    +S  P            + S+ D  +  +++ + +    L+ +  S+ +R+ L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDE

Query:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFS
         L++L+  +    D    +   M++  F  F+
Subjt:  SLQKLICAIGSSPDPETELDRAMEDEAFRIFS

Q6UIM2 Zinc finger HIT domain-containing protein 3 (Fragment)8.7e-0526.02Show/hide
Query:  KYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI
        KY+CP C  PYCS+ CF+KHKE   P  +PV    +S  P            + S+ D  +  +++ + +    L+ +  S+ +R+ L +  L++L+  +
Subjt:  KYKCPLCLAPYCSLVCFKKHKEV--PCVKPVSAGDQSTAP------------NGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAI

Query:  GSSPDPETELDRAMEDEAFRIFS
            D    +   M++  F  F+
Subjt:  GSSPDPETELDRAMEDEAFRIFS

Q9CQK1 Zinc finger HIT domain-containing protein 37.9e-0627.34Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQK
        C VC E P KY+CP C  PYCS+ CF+KHKE       P  K    P    ++S   + S+ D  +  +++ + +    L+ +  S  +R+ L +  L++
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQK

Query:  LICAIGSSPDPETELDRAMEDEAFRIFS
        L+ ++    +    +   M++  F  F+
Subjt:  LICAIGSSPDPETELDRAMEDEAFRIFS

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.2e-2844.94Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGS---------------------------------LVDRPICVEDQSEVLEK
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP         P  S                                  V RPI VE++  +LEK
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGS---------------------------------LVDRPICVEDQSEVLEK

Query:  SQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKVLFSV
        +Q EAIASSSEIR  L DE LQKLI +I SS +P  ELD AM  EAFR F+ K+L ++
Subjt:  SQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKVLFSV

AT4G28820.2 HIT-type Zinc finger family protein2.0e-2844.59Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSL--------------------------------VDRPICVEDQSEVLEKS
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP         P                                    V RPI VE++  +LEK+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSL--------------------------------VDRPICVEDQSEVLEKS

Query:  QLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKVLFSV
        Q EAIASSSEIR  L DE LQKLI +I SS +P  ELD AM  EAFR F+ K+L ++
Subjt:  QLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETELDRAMEDEAFRIFSSKVLFSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTTTGCCTTGCACCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGT
TCCTTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTCGAAGACCAAAGTGAAGTACTTGAAAAGTCGC
AGCTGGAGGCTATCGCTTCTTCCTCAGAAATACGCAATACTTTGAATGATGAAAGCCTTCAGAAGCTCATCTGTGCCATTGGTAGTTCACCGGATCCAGAAACCGAACTT
GATAGAGCTATGGAAGACGAAGCATTTCGCATATTCAGCAGCAAGGTATTATTTTCAGTTAAAGTG
mRNA sequenceShow/hide mRNA sequence
ATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTTTGCCTTGCACCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGT
TCCTTGTGTTAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGGATCACTTGTAGATAGGCCAATATGTGTCGAAGACCAAAGTGAAGTACTTGAAAAGTCGC
AGCTGGAGGCTATCGCTTCTTCCTCAGAAATACGCAATACTTTGAATGATGAAAGCCTTCAGAAGCTCATCTGTGCCATTGGTAGTTCACCGGATCCAGAAACCGAACTT
GATAGAGCTATGGAAGACGAAGCATTTCGCATATTCAGCAGCAAGGTATTATTTTCAGTTAAAGTG
Protein sequenceShow/hide protein sequence
MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPVSAGDQSTAPNGSLVDRPICVEDQSEVLEKSQLEAIASSSEIRNTLNDESLQKLICAIGSSPDPETEL
DRAMEDEAFRIFSSKVLFSVKV