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MS017613 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017613
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein LOW PSII ACCUMULATION 1, chloroplastic
Genome locationscaffold373:937436..937573
RNA-Seq ExpressionMS017613
SyntenyMS017613
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_009397542.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Musa acuminata subsp. malaccensis]7.9e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
XP_022131239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia]7.9e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
XP_022967293.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]7.9e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
XP_023554665.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]7.9e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
XP_038888898.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]7.9e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
TrEMBL top hitse value%identityAlignment
A0A0A0L902 Uncharacterized protein3.8e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
A0A5D3BG35 Protein LOW PSII ACCUMULATION 13.8e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
A0A6J1BP58 protein LOW PSII ACCUMULATION 1, chloroplastic3.8e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic3.8e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
A0A6J1HWD0 protein LOW PSII ACCUMULATION 1, chloroplastic3.8e-19100Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein2.0e-0448.65Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
        Y+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
AT4G28740.1 FUNCTIONS IN: molecular_function unknown1.3e-1986.67Show/hide
Query:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV
        YLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Subjt:  YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATTTGTCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCT
TCTAGATGGAATGGATGGAAGAGTTCTT
mRNA sequenceShow/hide mRNA sequence
TATTTGTCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCT
TCTAGATGGAATGGATGGAAGAGTTCTT
Protein sequenceShow/hide protein sequence
YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL