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MS017626 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017626
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD repeat-containing protein 26
Genome locationscaffold373:1019209..1019384
RNA-Seq ExpressionMS017626
SyntenyMS017626
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK19007.1 WD repeat-containing protein 26 [Cucumis melo var. makuwa]1.9e-1769.23Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVY
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV+
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVY
XP_008447357.1 PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 26 [Cucumis melo]3.2e-1770.31Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
XP_011651627.1 WD repeat-containing protein WDS homolog [Cucumis sativus]3.2e-1770.31Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
XP_022157319.1 WD repeat-containing protein 26 [Momordica charantia]6.5e-1873.44Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EKTL PPSCLPDRRLE        AQIDSCIYH+FS AV+IYEDHCCGRDQIPTETVQ+
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
XP_038888993.1 WD repeat-containing protein WDS homolog [Benincasa hispida]3.2e-1770.31Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
TrEMBL top hitse value%identityAlignment
A0A0A0L8N6 LisH domain-containing protein9.1e-1869.23Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVY
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV+
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVY
A0A1S3BGP5 LOW QUALITY PROTEIN: WD repeat-containing protein 261.6e-1770.31Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
A0A5D3D618 WD repeat-containing protein 269.1e-1869.23Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVY
        +  D EKTL PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+QV+
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVY
A0A6J1DW56 WD repeat-containing protein 263.1e-1873.44Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EKTL PPSCLPDRRLE        AQIDSCIYH+FS AV+IYEDHCCGRDQIPTETVQ+
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
A0A6J1HGL5 WD repeat-containing protein WDS homolog7.7e-1767.19Show/hide
Query:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
        +  D EK L PP+CLPDRRLE        AQIDSC+YH+FS AV+IYEDHCCGRDQIPTET+Q+
Subjt:  IYEDEEKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQV
SwissProt top hitse value%identityAlignment
Q9FND4 WD repeat-containing protein WDS homolog9.4e-1250.82Show/hide
Query:  EKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVYI
        EK +  P  +P+RRLE         QID+C+YH+   AV++Y+DHCCGRDQIP+ETVQ+ +
Subjt:  EKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVYI
Q9FNN2 WD repeat-containing protein 26 homolog1.7e-0538.1Show/hide
Query:  DEEKTLAPPS---------CLPDRRLEAQIDSCIYHD-FSSAVAIYEDHCCGRDQIPTETVQV
        +E +TL P S         CL +  L  Q DSC++H+   S +++Y DH CG+ QIP++T Q+
Subjt:  DEEKTLAPPS---------CLPDRRLEAQIDSCIYHD-FSSAVAIYEDHCCGRDQIPTETVQV
Arabidopsis top hitse value%identityAlignment
AT5G08560.1 transducin family protein / WD-40 repeat family protein1.2e-0638.1Show/hide
Query:  DEEKTLAPPS---------CLPDRRLEAQIDSCIYHD-FSSAVAIYEDHCCGRDQIPTETVQV
        +E +TL P S         CL +  L  Q DSC++H+   S +++Y DH CG+ QIP++T Q+
Subjt:  DEEKTLAPPS---------CLPDRRLEAQIDSCIYHD-FSSAVAIYEDHCCGRDQIPTETVQV
AT5G08560.2 transducin family protein / WD-40 repeat family protein1.2e-0638.1Show/hide
Query:  DEEKTLAPPS---------CLPDRRLEAQIDSCIYHD-FSSAVAIYEDHCCGRDQIPTETVQV
        +E +TL P S         CL +  L  Q DSC++H+   S +++Y DH CG+ QIP++T Q+
Subjt:  DEEKTLAPPS---------CLPDRRLEAQIDSCIYHD-FSSAVAIYEDHCCGRDQIPTETVQV
AT5G43920.1 transducin family protein / WD-40 repeat family protein6.7e-1350.82Show/hide
Query:  EKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVYI
        EK +  P  +P+RRLE         QID+C+YH+   AV++Y+DHCCGRDQIP+ETVQ+ +
Subjt:  EKTLAPPSCLPDRRLE--------AQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVYI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTACGAGGATGAGGAAAAAACTCTTGCTCCTCCAAGTTGTTTGCCAGATAGAAGGTTGGAGGCACAGATTGATTCGTGTATATATCATGATTTTTCTAGTGCAGTTGC
AATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAGACGGTTCAGGTGTATATA
mRNA sequenceShow/hide mRNA sequence
ATTTACGAGGATGAGGAAAAAACTCTTGCTCCTCCAAGTTGTTTGCCAGATAGAAGGTTGGAGGCACAGATTGATTCGTGTATATATCATGATTTTTCTAGTGCAGTTGC
AATCTATGAGGACCACTGCTGTGGCAGGGATCAAATACCAACAGAGACGGTTCAGGTGTATATA
Protein sequenceShow/hide protein sequence
IYEDEEKTLAPPSCLPDRRLEAQIDSCIYHDFSSAVAIYEDHCCGRDQIPTETVQVYI