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MS017629 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017629
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontetratricopeptide repeat protein 4 homolog
Genome locationscaffold373:1031957..1032283
RNA-Seq ExpressionMS017629
SyntenyMS017629
Gene Ontology termsGO:0051879 - Hsp90 protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2602023.1 tetratricopeptide repeat protein 4-like protein [Pyrus ussuriensis x Pyrus communis]4.3e-1875.93Show/hide
Query:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +GSSKW+KVNEKRTLHDVL  PN ++PGIPVFYVVS+ S FYK+FKAG W PPS
Subjt:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
XP_008447360.1 PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis melo]6.7e-1980Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        ++GSSKWIKV+E+RTLH+VL  PN +IPGIPVFY+VSRNSKFYKDFKAGRW PPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
XP_011651622.1 tetratricopeptide repeat protein 4 homolog [Cucumis sativus]7.9e-2083.64Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        ++GSSKWIKV+E+RTLHDVL  PN +IPGIPVFYVVSRNSKFYKDFKAGRW PPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
XP_022159855.1 tetratricopeptide repeat protein 4 homolog isoform X1 [Momordica charantia]1.5e-2394.55Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +EGSSKWIKVNEKRTLHDVL APNCLIPGIPVFYVV RNSKFYKDFKAGRWGPPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
XP_022159856.1 tetratricopeptide repeat protein 4 homolog isoform X2 [Momordica charantia]1.5e-2394.55Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +EGSSKWIKVNEKRTLHDVL APNCLIPGIPVFYVV RNSKFYKDFKAGRWGPPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
TrEMBL top hitse value%identityAlignment
A0A0A0LC81 Uncharacterized protein2.0e-2184.21Show/hide
Query:  FPDEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        F D+GSSKWIKV+E+RTLHDVL  PN +IPGIPVFYVVSRNSKFYKDFKAGRW PPS
Subjt:  FPDEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
A0A1S3BHV4 tetratricopeptide repeat protein 4 homolog3.2e-1980Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        ++GSSKWIKV+E+RTLH+VL  PN +IPGIPVFY+VSRNSKFYKDFKAGRW PPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
A0A5N5FGL6 Tetratricopeptide repeat protein 4-like protein2.1e-1875.93Show/hide
Query:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +GSSKW+KVNEKRTLHDVL  PN ++PGIPVFYVVS+ S FYK+FKAG W PPS
Subjt:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
A0A6J1DZY6 tetratricopeptide repeat protein 4 homolog isoform X17.4e-2494.55Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +EGSSKWIKVNEKRTLHDVL APNCLIPGIPVFYVV RNSKFYKDFKAGRWGPPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
A0A6J1E576 tetratricopeptide repeat protein 4 homolog isoform X27.4e-2494.55Show/hide
Query:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +EGSSKWIKVNEKRTLHDVL APNCLIPGIPVFYVV RNSKFYKDFKAGRWGPPS
Subjt:  DEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
SwissProt top hitse value%identityAlignment
Q54M20 Tetratricopeptide repeat protein 4 homolog1.5e-0544.44Show/hide
Query:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDF
        E   KWI+V     +  V+  P  +IP IP+FY+VSR + FYK F
Subjt:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDF
Arabidopsis top hitse value%identityAlignment
AT1G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.8e-1866.67Show/hide
Query:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS
        +GSS  +KVNE+RTLHDVL  P  +IP IPVFY+VS+ SKFYKDF AG+W PP+
Subjt:  EGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGTCATCTGCTTTCTGTGCATGGCTTTCCCAGATGAAGGCTCTTCTAAATGGATCAAAGTTAACGAAAAAAGAACGCTTCACGACGTTCTAATGGCGCCTAACTGCCT
CATACCGGGAATACCAGTCTTTTATGTTGTTTCGAGGAACTCAAAATTTTACAAAGATTTCAAAGCTGGGAGATGGGGTCCTCCTTCG
mRNA sequenceShow/hide mRNA sequence
ATTGTCATCTGCTTTCTGTGCATGGCTTTCCCAGATGAAGGCTCTTCTAAATGGATCAAAGTTAACGAAAAAAGAACGCTTCACGACGTTCTAATGGCGCCTAACTGCCT
CATACCGGGAATACCAGTCTTTTATGTTGTTTCGAGGAACTCAAAATTTTACAAAGATTTCAAAGCTGGGAGATGGGGTCCTCCTTCG
Protein sequenceShow/hide protein sequence
IVICFLCMAFPDEGSSKWIKVNEKRTLHDVLMAPNCLIPGIPVFYVVSRNSKFYKDFKAGRWGPPS